Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075720.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07670.1 | HORVU6Hr1G075720.2 | AT1G26830.1 | 15749712 |
| AT4G07670.1 | HORVU6Hr1G075720.2 | AT1G69670.1 | 15749712 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G104570.2 | Barley | plastid | 16.49 | 20.93 |
| HORVU3Hr1G070560.2 | Barley | plastid | 18.32 | 19.02 |
| HORVU0Hr1G020840.1 | Barley | plastid | 9.69 | 18.97 |
| HORVU3Hr1G080240.1 | Barley | plastid | 14.92 | 18.94 |
| HORVU6Hr1G029960.1 | Barley | mitochondrion | 9.16 | 18.23 |
| HORVU5Hr1G007810.6 | Barley | endoplasmic reticulum, plasma membrane, plastid | 14.4 | 18.21 |
| CDY44276 | Canola | plastid | 7.33 | 16.77 |
| HORVU0Hr1G020850.2 | Barley | plastid | 17.02 | 16.25 |
| Solyc12g008540.1.1 | Tomato | extracellular | 2.88 | 13.1 |
| AT4G07670.1 | Thale cress | cytosol | 8.64 | 11.79 |
| KRH74232 | Soybean | endoplasmic reticulum, plastid | 14.92 | 11.38 |
| HORVU3Hr1G070790.1 | Barley | peroxisome, plasma membrane | 18.59 | 9.29 |
| HORVU3Hr1G070550.5 | Barley | mitochondrion | 17.28 | 8.81 |
| CDY35864 | Canola | plasma membrane, plastid | 14.66 | 8.38 |
| CDX92505 | Canola | plasma membrane, plastid | 13.87 | 7.92 |
| CDY42292 | Canola | endoplasmic reticulum, plasma membrane | 13.87 | 7.84 |
| PGSC0003DMT400000952 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 13.61 | 7.5 |
| AT5G19740.1 | Thale cress | vacuole | 12.83 | 7.2 |
| VIT_11s0016g03010.t01 | Wine grape | cytosol | 14.4 | 7.13 |
| HORVU0Hr1G020860.1 | Barley | cytosol | 2.09 | 6.02 |
| HORVU3Hr1G070540.14 | Barley | cytosol, extracellular | 2.09 | 2.12 |
| Solyc12g008550.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 1.05 | 1.54 |
| HORVU5Hr1G103900.13 | Barley | cytosol | 1.31 | 1.25 |
| KRH74227 | Soybean | cytosol | 0.26 | 0.49 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G103870.2 | EnsemblPlantsGene:HORVU5Hr1G103870 | Gene3D:3.50.30.30 | ncoils:Coil | PANTHER:PTHR10404 | PANTHER:PTHR10404:SF63 |
| SEG:seg | SUPFAM:SSF52025 | UniParc:UPI000B484371 | UniProt:A0A287SJP0 | MapMan:19.4.5.7.3 | : |
Description
No Description!
Coordinates
chrchr5H:+:617483451..617486021
Molecular Weight (calculated)
36613.2 Da
IEP (calculated)
12.360
GRAVY (calculated)
-0.668
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: PPRRLPRRRS RSASRASSCP SACCSSSPFS CSTAARRGPA PAPTPPRCSS RSPPGPTPAS PPTCARSRPG RTSRGRPGRR AWPRTCTRGS APRDSARSPA
101: STRRCSRTGR TPPSRCSPPT APCWRASRLT SPRTRAAASC GPTTRTLPPA RPWPRRCSST WAARRTSPRS TGSGCPSAAA SPLQSAGAGT AAGWWHAPRG
201: RAPSQCSSPA TRTAASRGER SCSAAPATRS RPAGPRPTAR RFDHEAVRRR FPTIPSMPVS ADTAAAIVRS LGGPALPPEW RAGLGLGLGL EGHAGGVGPG
301: PTLVNFTYQE DRKMATIKDI FAIIKGYQEP DRYVILSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XQPPLDSVGH SN
101: STRRCSRTGR TPPSRCSPPT APCWRASRLT SPRTRAAASC GPTTRTLPPA RPWPRRCSST WAARRTSPRS TGSGCPSAAA SPLQSAGAGT AAGWWHAPRG
201: RAPSQCSSPA TRTAASRGER SCSAAPATRS RPAGPRPTAR RFDHEAVRRR FPTIPSMPVS ADTAAAIVRS LGGPALPPEW RAGLGLGLGL EGHAGGVGPG
301: PTLVNFTYQE DRKMATIKDI FAIIKGYQEP DRYVILSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XQPPLDSVGH SN
001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT
Arabidopsis Description
AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.