CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99095
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	KRG99095	AT1G26830.1	15749712
AT4G07670.1	KRH45896	AT1G26830.1	15749712
AT4G07670.1	KRH70713	AT1G26830.1	15749712
AT4G07670.1	KRG99095	AT1G69670.1	15749712
AT4G07670.1	KRH45896	AT1G69670.1	15749712
AT4G07670.1	KRH70713	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008540.1.1	Tomato	extracellular	11.98	71.43
AT4G07670.1	Thale cress	cytosol	34.53	61.79
KRH03146	Soybean	mitochondrion	11.18	56.57
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	69.06	49.93
AT5G19740.1	Thale cress	vacuole	67.07	49.34
KRH07659	Soybean	cytosol, extracellular, plastid	11.58	48.74
CDX92505	Canola	plasma membrane, plastid	65.07	48.73
CDY35864	Canola	plasma membrane, plastid	63.87	47.9
CDY42292	Canola	endoplasmic reticulum, plasma membrane	64.47	47.78
VIT_11s0016g03010.t01	Wine grape	cytosol	71.86	46.69
CDY44276	Canola	plastid	14.97	44.91
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	37.52	41.59
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	55.69	41.15
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	58.08	40.14
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	57.48	39.56
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	58.48	39.07
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	58.48	39.07
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	56.49	38.98
Zm00001d012765_P005	Maize	extracellular	55.89	38.62
Os01t0740500-00	Rice	plastid	55.89	38.3
TraesCS3B01G311000.1	Wheat	plastid	55.69	38.27
Zm00001d043519_P004	Maize	plastid	55.49	37.98
TraesCS3D01G277000.1	Wheat	plastid	55.09	37.86
TraesCS3A01G276800.2	Wheat	plastid	55.09	37.86
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	54.89	37.57
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.29	36.98
Zm00001d043517_P002	Maize	mitochondrion	54.09	36.47
TraesCS3D01G276900.1	Wheat	plastid	53.09	35.66
TraesCS3A01G276700.1	Wheat	cytosol	53.69	33.54
TraesCS3B01G310900.1	Wheat	cytosol	53.49	33.5
KRH68064	Soybean	endoplasmic reticulum	42.32	30.55
KRG96329	Soybean	plasma membrane	41.92	30.17
KRH32940	Soybean	plastid	41.32	29.78
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.58	20.46
HORVU5Hr1G103870.2	Barley	mitochondrion	11.38	14.92
Os01t0740600-01	Rice	cytosol	0.2	1.15
KRH74227	Soybean	cytosol	0.2	0.49

Protein Annotations

MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	UniProt:A0A0R0LBU3	EMBL:ACUP02000010	EnsemblPlantsGene:GLYMA_01G0067001
EnsemblPlants:KRH74232	ProteinID:KRH74232	ProteinID:KRH74232.1	ProteinID:KRH74233.1	ProteinID:KRH74234.1	ProteinID:KRH74235.1
ProteinID:KRH74236.1	InterPro:PA_domain	PFAM:PF02225	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF52025	SUPFAM:SSF53187	TMHMM:TMhelix	UniParc:UPI0006EDC794	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:655433..658525

Molecular Weight (calculated)

53952.2 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.237

Length

501 amino acids

Sequence
(BLAST)

001: MKTSTTTTTT ILAIATSYLF LLITPTQKST YHSLFISDSL SDNASIYNHL KTLTRRPHVA GSKANAEAAS YVVSVFTSSY IPSHIVSYEV SLTYPLSRSL
101: VLITNPSTTF TLHQETYEGD PYADVADEVV PTFHAYAKSG TVAAPVCYVN YGRVEDYLTL KDKNGVNVSG TVVLARHGKI YRGDIVKNAY EEGAVGVVIY
201: SDRKDYGGEE KWFPDEKWLP PSGVQVGTVY GGLGDPTTPG WASSSSGDGE CERLNKDEVE KGGDVPLIPS LPVSAADGEK IMRSIGGPVA EDDWQGSKDA
301: PIYRLGPGPG ILNLSYKGQD VIATIQNVIG VIEGAEEPDR FVILGNHRDA WTFGAVDPNS GTAALLEVAQ RLGKLQKKGW RPRRTILLCN WDAEEYGLIG
401: STEWVEENRE ILASKAVAYL NADCVVGGPG FNVRATPQLD ELIKRATQEV KDPDNSSQSI YESWTSSGSS PLFGRLGGGG SDYASFLQHV GIPAADIAFG
501: G

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.