Factsheet for TraesCS3A01G276700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G310900.1	Wheat	cytosol	95.89	96.12
Os01t0740600-01	Rice	cytosol	9.48	87.36
TraesCS3D01G276900.1	Wheat	plastid	81.17	87.27
HORVU3Hr1G070550.5	Barley	mitochondrion	80.3	85.98
HORVU0Hr1G020840.1	Barley	plastid	20.2	83.08
Zm00001d043517_P002	Maize	mitochondrion	72.19	77.93
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	41.65	73.89
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	54.11	59.86
TraesCS3A01G276800.2	Wheat	plastid	54.24	59.67
Solyc12g008540.1.1	Tomato	extracellular	6.11	58.33
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	49.0	57.96
CDY35864	Canola	plasma membrane, plastid	45.64	54.79
AT5G19740.1	Thale cress	vacuole	45.76	53.89
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	46.51	53.82
KRH74232	Soybean	endoplasmic reticulum, plastid	33.54	53.69
KRH74227	Soybean	cytosol	13.72	53.4
CDY42292	Canola	endoplasmic reticulum, plasma membrane	44.76	53.11
CDX92505	Canola	plasma membrane, plastid	44.14	52.91
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.71	51.74
AT4G07670.1	Thale cress	cytosol	17.96	51.43
VIT_11s0016g03010.t01	Wine grape	cytosol	47.26	49.16
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	35.79	40.31
CDY44276	Canola	plastid	7.73	37.13

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:IPR036757
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G276700	EnsemblPlants:TraesCS3A01G276700.1	TIGR:cd02121	TIGR:cd08022	SEG:seg

Description

No Description!

Coordinates

chr3A:+:506800050..506803985

Molecular Weight (calculated)

87677.9 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.277

Length

802 amino acids

Sequence
(BLAST)

001: MRQKYTVDSY RCSRLDNRPS TTPRGCYSTV MPWWSHRGED TPIYTGRVAT CQCSSRDMTG APETARPMSG HGKQQQLLRH PALAAGHGSG SGMGRRRYLA
101: FLAIAAALVA SYHLLHAPTP SSRYHALFLT LGSNASAAAH LRALTLRPHV AGTPANALAA EYVRATLSSL SFPTRVTPYS VLLSYPLHRL LSLSAPGRAT
201: KSFSLTQDTY PNDPYAEAAA EVVPTYFAYS GSGSVTAEVV YANYGDRKDY AYLASRGVDV AGKVVLARYG DIHCEDMVRN ARDAGAAATI IYTDAKDFGG
301: PAGKGKRKWF PNTRWLPPSG VQMGTLYYGN GDPTTPMWPS CAAGEDCERL STEELEASEA MPGIPALPVS GRDGETIQKA MGGGVAPPEW QGGEGAPVYR
401: IGPGPAVLNL TYIGNDTLAT IENVFAVIEG KEEPDRYVII GNHRDAWTFG AVDPNSGTAA MLEVAERLSQ LEKKGWRPRR TIIVCSWDAE EFALIGSTEW
501: AEDNIDMLAS RAVAYLNVDI SVFGPGGLMP RATPQLDELI KEASKMVPDP DDPSHTLYDY MIRQNPPIAR VAGAGTDFAA FVQHIGVPSL DMSYGLFSEY
601: PVYHSLYDDF VWMERFGDPL FHRHVALASV WGLIALRLAD DEIIPFNYVP YASELEESSK VVEDGCPGCA VSFSPLHKSI KQLEKAATKI HMEKKVLQAE
701: KWGLNTRERT LKVREMNDRL MMAERAFTNG EGLAGRPWYK HMIYASSDQD DWGTKAFPGI VSAMANAQKL NTTESWRLLQ HEIYRGARAV SKASAVLDGS
801: LT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.