Factsheet for TraesCS3D01G276900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G070550.5	Barley	mitochondrion	91.15	90.79
Os01t0740600-01	Rice	cytosol	10.32	88.51
HORVU0Hr1G020840.1	Barley	plastid	22.25	85.13
TraesCS3B01G310900.1	Wheat	cytosol	87.94	82.0
TraesCS3A01G276700.1	Wheat	cytosol	87.27	81.17
Zm00001d043517_P002	Maize	mitochondrion	80.16	80.48
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	44.91	74.11
TraesCS3D01G277000.1	Wheat	plastid	58.71	60.08
Solyc12g008540.1.1	Tomato	extracellular	6.7	59.52
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	58.31	58.0
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	52.41	57.67
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.71	56.44
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	50.94	54.83
CDY35864	Canola	plasma membrane, plastid	48.93	54.64
AT5G19740.1	Thale cress	vacuole	49.6	54.33
KRH74227	Soybean	cytosol	14.88	53.88
CDY42292	Canola	endoplasmic reticulum, plasma membrane	48.26	53.25
KRH74232	Soybean	endoplasmic reticulum, plastid	35.66	53.09
CDX92505	Canola	plasma membrane, plastid	47.59	53.06
AT4G07670.1	Thale cress	cytosol	19.57	52.14
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.69	50.97
VIT_11s0016g03010.t01	Wine grape	cytosol	50.4	48.77
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	38.07	39.89
CDY44276	Canola	plastid	7.91	35.33

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:IPR036757
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G276900	EnsemblPlants:TraesCS3D01G276900.1	TIGR:cd02121	TIGR:cd08022	SEG:seg

Description

No Description!

Coordinates

chr3D:+:384247589..384251318

Molecular Weight (calculated)

81100.2 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.205

Length

746 amino acids

Sequence
(BLAST)

001: MSGAPESARP MSAHGKQQPL LRYPAPAAGN GSGSGMGRRR YLAFLAIAAA LVASYHLLHA PTPSSRYHAL FLTLGSNASA AAHLRALTLR PHVAGTQANA
101: LAAEYVRATL SSLSFPTRVT PYSVLLSYPV HRSLSLSAGP GRPNNVFPLV QETYPGDPYA EAAAEVVPTY FAYSGSGSVT AEVVYANYGD RKDYAYLASR
201: GVDVAGKVVL ARYGDIHCED MVRNARDAGA AAAIIYTDAK DFGGPAAKGK QKWFPNTRWL PPSGVQVGTL YYGNGDPTTP MWPSCAAGED CERLSMEELD
301: ASEAMPGIPA LPVSGRDGET IQKAMGGGVA PPEWQGGEGA PVYRIGPGPA VLNLTYIGND TLATIENVFA VIEGKEEPDR YVIIGNHRDA WTFGAVDPNS
401: GTAAMLEIAE RLSQLEKKGW RPRRTIIVCS WDAEEFALIG STEWAEDNID IIGSRAVAYL NVDISVFGPG GLVPRATPQL DELIQEASRM VPDPDDPSHT
501: LYDYMIRQNP PIARVAGAGT DFAAFVQHIG VPSLDMSYGL FSEYPVYHSL YDDFVWMQRF GDPLFHRHVA LASVWGLIAL RLADDEIIPF NYVSYASELE
601: ESSKVVEDGC PGCAVSFSPL HKSIKQLEKA AMKIHMEKKV LQADKWGLNT RERTLKVREM NDRLMMAERA FTNREGLAGR PWYKHMIYAS SDQDDWGTKA
701: FPGIVSAMAN AQKLNTSESW RLLQHEIYRG ARAVSKASAV LDGRLT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.