Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G306600.1 | |
| TraesCS6B01G335200.1 | |
| TraesCS6D01G285800.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G276700.1 | Wheat | cytosol | 96.12 | 95.89 |
| Os01t0740600-01 | Rice | cytosol | 9.62 | 88.51 |
| TraesCS3D01G276900.1 | Wheat | plastid | 82.0 | 87.94 |
| HORVU3Hr1G070550.5 | Barley | mitochondrion | 80.88 | 86.38 |
| HORVU0Hr1G020840.1 | Barley | plastid | 20.12 | 82.56 |
| Zm00001d043517_P002 | Maize | mitochondrion | 72.38 | 77.93 |
| Os01t0740650-00 | Rice | cytosol, mitochondrion, plasma membrane, plastid | 41.88 | 74.11 |
| TraesCS3B01G311000.1 | Wheat | plastid | 55.0 | 60.36 |
| Solyc12g008540.1.1 | Tomato | extracellular | 6.25 | 59.52 |
| GSMUA_Achr9P06030_001 | Banana | endoplasmic reticulum | 49.62 | 58.55 |
| TraesCS3B01G309500.4 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 54.12 | 57.73 |
| CDY35864 | Canola | plasma membrane, plastid | 45.88 | 54.94 |
| PGSC0003DMT400000952 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 47.38 | 54.69 |
| KRH74227 | Soybean | cytosol | 14.0 | 54.37 |
| AT5G19740.1 | Thale cress | vacuole | 46.25 | 54.33 |
| KRH74232 | Soybean | endoplasmic reticulum, plastid | 33.5 | 53.49 |
| CDY42292 | Canola | endoplasmic reticulum, plasma membrane | 45.0 | 53.25 |
| CDX92505 | Canola | plasma membrane, plastid | 44.38 | 53.06 |
| Solyc12g008550.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.0 | 52.51 |
| AT4G07670.1 | Thale cress | cytosol | 18.0 | 51.43 |
| VIT_11s0016g03010.t01 | Wine grape | cytosol | 47.5 | 49.29 |
| TraesCS5B01G429500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 36.0 | 40.45 |
| CDY44276 | Canola | plastid | 7.62 | 36.53 |
Protein Annotations
| Gene3D:1.20.930.40 | MapMan:19.4.5.7.3 | Gene3D:3.40.630.10 | Gene3D:3.50.30.30 | ncoils:Coil | InterPro:IPR036757 |
| InterPro:PA_domain | PFAM:PF02225 | PFAM:PF04253 | PFAM:PF04389 | PANTHER:PTHR10404 | PANTHER:PTHR10404:SF45 |
| InterPro:Peptidase_M28 | SUPFAM:SSF47672 | SUPFAM:SSF52025 | SUPFAM:SSF53187 | InterPro:TFR-like_dimer_dom | InterPro:TFR-like_dimer_dom_sf |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G310900 | EnsemblPlants:TraesCS3B01G310900.1 | TIGR:cd02121 | TIGR:cd08022 | SEG:seg |
Description
No Description!
Coordinates
chr3B:+:499450466..499454313
Molecular Weight (calculated)
87551.8 Da
IEP (calculated)
6.662
GRAVY (calculated)
-0.266
Length
800 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQKYTVDSY RCSLLDSRPS TTPRGCYSTV MPWWSHRGED IYTGRVATCQ CSSRDMSGAP ETARAMSAHG KQQPLLRYPA PAAGHGSGSG MGRRRHLAFL
101: AIAAALVASY HLLHAPTPSS RYHALFLTLG SNASAAAHLR ELTLRPHVAG TPANALAAEY VRATLSALSF PTRVTPYSVL LSYPVHRSLS LSAPGRATKS
201: FSLTQDTYPN DPYAEAAAEV VPTYFAYSGS GSVTAEVVYA NYGDRKDYAY LASHGVDVAG KVVLARYGDI HCEDMVRNAR DAGAAAAIIY TDAKDFGGPA
301: AKGKRKWFPN TRWLPPSGVQ VGTLYYGNGD PTTPMWPSCA AGEDCERLSM DELDTSEAMP GIPTLPVSGR DGETIQKAMG GGVAPPEWQG GEGAPVYRIG
401: PGPAVLNLTY MGNDTLATIE NVFAVIEGKE EPDRYVIIGN HRDAWTFGAV DPNSGTAAML EIAERLSQLE KKGWRPRRTI IVCSWDAEEF ALIGSTEWAE
501: DNIDMLASRA VAYLNVDISV FGPGGLMPRA TPQLDELIKE ASRMVPDPDD PSHTLYDYMI RQNPPIARVA GAGTDFAAFV QHIGVPSLDM SYGLFSEYPV
601: YHSLYDDFVW MERFGDPLFH RHVALASVWG LIALRLADDE IIPFNYVSYA AELEESSKVV EDGCPGCAVS FSPLHKSIKQ LEKAAMKIHM EKKVLQAEKW
701: GLNTRERTLK VREMNDRLMM AERAFTNREG LAGRPWYKHM IYASSDQDDW GTKAFPGIVS AMANAQKLNT SESWRLLQHE IYRGARAVSK ASAVLDGRLT
101: AIAAALVASY HLLHAPTPSS RYHALFLTLG SNASAAAHLR ELTLRPHVAG TPANALAAEY VRATLSALSF PTRVTPYSVL LSYPVHRSLS LSAPGRATKS
201: FSLTQDTYPN DPYAEAAAEV VPTYFAYSGS GSVTAEVVYA NYGDRKDYAY LASHGVDVAG KVVLARYGDI HCEDMVRNAR DAGAAAAIIY TDAKDFGGPA
301: AKGKRKWFPN TRWLPPSGVQ VGTLYYGNGD PTTPMWPSCA AGEDCERLSM DELDTSEAMP GIPTLPVSGR DGETIQKAMG GGVAPPEWQG GEGAPVYRIG
401: PGPAVLNLTY MGNDTLATIE NVFAVIEGKE EPDRYVIIGN HRDAWTFGAV DPNSGTAAML EIAERLSQLE KKGWRPRRTI IVCSWDAEEF ALIGSTEWAE
501: DNIDMLASRA VAYLNVDISV FGPGGLMPRA TPQLDELIKE ASRMVPDPDD PSHTLYDYMI RQNPPIARVA GAGTDFAAFV QHIGVPSLDM SYGLFSEYPV
601: YHSLYDDFVW MERFGDPLFH RHVALASVWG LIALRLADDE IIPFNYVSYA AELEESSKVV EDGCPGCAVS FSPLHKSIKQ LEKAAMKIHM EKKVLQAEKW
701: GLNTRERTLK VREMNDRLMM AERAFTNREG LAGRPWYKHM IYASSDQDDW GTKAFPGIVS AMANAQKLNT SESWRLLQHE IYRGARAVSK ASAVLDGRLT
001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT
Arabidopsis Description
AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.