Factsheet for TraesCS3B01G311000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G277000.1	Wheat	plastid	96.98	96.98
HORVU3Hr1G070560.2	Barley	plastid	47.74	94.57
TraesCS3A01G276800.2	Wheat	plastid	90.95	90.95
Os01t0740500-00	Rice	plastid	78.6	78.39
Zm00001d043519_P004	Maize	plastid	78.33	78.01
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	76.13	75.82
HORVU0Hr1G020850.2	Barley	plastid	36.21	66.0
Solyc12g008540.1.1	Tomato	extracellular	6.72	58.33
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	59.67	58.0
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	53.77	57.82
KRH74232	Soybean	endoplasmic reticulum, plastid	38.27	55.69
TraesCS3B01G310900.1	Wheat	cytosol	60.36	55.0
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	52.13	54.83
AT5G19740.1	Thale cress	vacuole	51.03	54.63
CDX92505	Canola	plasma membrane, plastid	50.07	54.56
CDY42292	Canola	endoplasmic reticulum, plasma membrane	49.66	53.55
CDY35864	Canola	plasma membrane, plastid	48.83	53.29
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.66	52.51
KRH74227	Soybean	cytosol	14.81	52.43
AT4G07670.1	Thale cress	cytosol	20.03	52.14
VIT_11s0016g03010.t01	Wine grape	cytosol	53.77	50.84
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.37	40.31
CDY44276	Canola	plastid	9.19	40.12

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	ncoils:Coil	InterPro:IPR036757
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3B01G311000	EnsemblPlants:TraesCS3B01G311000.1	TIGR:cd02121	TIGR:cd08022	SEG:seg

Description

No Description!

Coordinates

chr3B:+:499628127..499632869

Molecular Weight (calculated)

78681.6 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.179

Length

729 amino acids

Sequence
(BLAST)

001: MARPDAASLL SPSPPPFKPR RRGRLLPSIL AVLAAAVALF LLAVLRSPPT PSPNLGSLFL SLGSNNTAAS HLRALTLHPH VAGTKANSLT AAYVLHAFSS
101: LSIPSHITPY SVLLSYPVHR SLSLSAGPGR ATKSFSLTQD TYPNDPYARA AAEVTPTFFA YSASGSVSAE AVYANYGREE DFAYLASRGV DVAGKVALAR
201: YGRIHCEDIV HNARAAGAAA ALVYPDPLEY GGPAGEGSFP DSRWLPPSGV QVGSLFRGVG DPTTPMWASS EGCERVSVED AMATDDMPGI PALPVSARDA
301: AEIQRVLGGA EAPADWQGRD GSPAYRLGPG PAVLNLTYQG NDTMATIENV FAVIEGAEEP DRYVILGNHR DAWTFGAADP NSGTAAMIEL AQRFSMLQKQ
401: GWRPRRTIIF CSWDAEEYGL TGSTEWVEEN REMLSSRAVA YLNIDVSVVG PVLLPSTTPQ LDELLLETIK LVQDPDNSSQ TVYDSWVKSS ASPKIQRLGN
501: GGSDYAAFVQ HVGIPSTNLI FGEGPGYPVY HSLYDDFVWV EKFADPGFRR HVAAASIWGI MALRLADEEI IPFDYMSYTT ELEAYTKVVE KETEGTAVSC
601: SPLYNSIRAL KKAATKVNSE RKDIERALSS KQLSKDSTKI RGLNDRLMQA ERAFTNREGI FKQAWYKHLI YGPSEQNDWD TASYPGIADA IATARSSNTS
701: ASWKLVQHEV HRVARAVAQA SAVLSGSLT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.