CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	CDY16196	AT1G26830.1	15749712
AT4G07670.1	CDY45004	AT1G26830.1	15749712
AT4G07670.1	CDY46437	AT1G26830.1	15749712
AT4G07670.1	CDY50732	AT1G26830.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G07670.1	Thale cress	cytosol	44.31	26.43
Solyc12g008540.1.1	Tomato	extracellular	13.17	26.19
KRH74232	Soybean	endoplasmic reticulum, plastid	44.91	14.97
CDX92505	Canola	plasma membrane, plastid	59.88	14.95
CDY35864	Canola	plasma membrane, plastid	58.68	14.67
CDY42292	Canola	endoplasmic reticulum, plasma membrane	58.08	14.35
AT5G19740.1	Thale cress	vacuole	52.69	12.92
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	31.14	11.5
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	43.11	10.39
VIT_11s0016g03010.t01	Wine grape	cytosol	43.71	9.47
TraesCS3B01G311000.1	Wheat	plastid	40.12	9.19
TraesCS3A01G276800.2	Wheat	plastid	39.52	9.05
Os01t0740500-00	Rice	plastid	39.52	9.03
TraesCS3D01G277000.1	Wheat	plastid	38.92	8.92
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	38.32	8.83
Zm00001d043519_P004	Maize	plastid	38.32	8.74
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	37.72	8.61
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	37.72	8.4
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	37.13	8.27
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	38.32	8.25
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	35.93	8.24
CDX76133	Canola	cytosol	22.75	8.21
Zm00001d012765_P005	Maize	extracellular	35.33	8.14
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	35.33	8.13
Zm00001d043517_P002	Maize	mitochondrion	35.93	8.08
TraesCS3D01G276900.1	Wheat	plastid	35.33	7.91
TraesCS3A01G276700.1	Wheat	cytosol	37.13	7.73
TraesCS3B01G310900.1	Wheat	cytosol	36.53	7.62
CDX78257	Canola	plastid	31.74	7.52
HORVU5Hr1G103870.2	Barley	mitochondrion	16.77	7.33
CDX73456	Canola	plastid	30.54	7.26
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	29.34	7.23
CDY35863	Canola	plastid	11.98	7.14
CDX76132	Canola	plastid	7.78	6.53
Os01t0740600-01	Rice	cytosol	0.6	1.15
KRH74227	Soybean	cytosol	0.6	0.49
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:CDY44276	EnsemblPlantsGene:GSBRNA2T00079792001	Gene3D:3.50.30.30	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	ProteinID:CDY44276
ProteinID:CDY44276.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52025	UniParc:UPI0004EBB38C	UniProt:A0A078I345
MapMan:35.1	:	:	:	:	:

Description

BnaC02g41410DBnaC02g41410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I345]

Coordinates

chrLK032584:+:93687..94387

Molecular Weight (calculated)

17290.3 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.014

Length

167 amino acids

Sequence
(BLAST)

001: MLSSSMVAAI LTKTASAASS PSCSPCLYLS SSSSPSSPSL LRIREIPIAS HHTSLAPSWS RDKIDYGGRD ECFPESGYCN GLGDPTTPGW ASVDGCERLS
101: EESVELRGDS PGIPSLPISA ADAEVILRSV VGGVGPGILN LSCVGKTVIA EIENVIGVIE GEQEPDR

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.