Factsheet for Zm00001d043517_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	Zm00001d018043_P001	AT1G26830.1	15749712
AT4G07670.1	Zm00001d018043_P001	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0740600-01	Rice	cytosol	10.36	88.51
TraesCS3D01G276900.1	Wheat	plastid	80.48	80.16
HORVU0Hr1G020840.1	Barley	plastid	20.86	79.49
HORVU3Hr1G070550.5	Barley	mitochondrion	79.81	79.17
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	46.16	75.89
TraesCS3B01G310900.1	Wheat	cytosol	77.93	72.38
TraesCS3A01G276700.1	Wheat	cytosol	77.93	72.19
Solyc12g008540.1.1	Tomato	extracellular	6.86	60.71
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	53.84	59.0
Zm00001d043519_P004	Maize	plastid	58.01	58.88
Zm00001d012765_P005	Maize	extracellular	56.53	57.93
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	51.01	54.69
CDY35864	Canola	plasma membrane, plastid	49.13	54.64
KRH74232	Soybean	endoplasmic reticulum, plastid	36.47	54.09
AT5G19740.1	Thale cress	vacuole	49.53	54.04
CDX92505	Canola	plasma membrane, plastid	48.45	53.81
CDY42292	Canola	endoplasmic reticulum, plasma membrane	48.86	53.7
KRH74227	Soybean	cytosol	14.4	51.94
AT4G07670.1	Thale cress	cytosol	19.52	51.79
VIT_11s0016g03010.t01	Wine grape	cytosol	51.82	49.94
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.09	49.03
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	36.74	38.29
CDY44276	Canola	plastid	8.08	35.93

Protein Annotations

Gene3D:1.20.930.40	EntrezGene:100280900	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	UniProt:A0A1D6NCY3
ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036757	ProteinID:ONM38351.1
InterPro:PA_domain	PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28	SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf
TMHMM:TMhelix	UniParc:UPI000842E010	EnsemblPlantsGene:Zm00001d043517	EnsemblPlants:Zm00001d043517_P002	EnsemblPlants:Zm00001d043517_T002	SEG:seg

Description

Peptidase M28 family protein

Coordinates

chr3:+:202504448..202508368

Molecular Weight (calculated)

81077.2 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.176

Length

743 amino acids

Sequence
(BLAST)

001: MATSRCGKQR QPLLHSPTPA DANGGGAAKR RRFVSFLAVT AALVASYHLL VPTNSSHYHA LFLSLGSNAT AAAHLRALTL RPHVAGTEAN AATARYVLHA
101: FSSLSFPAHI TPYSVLLSYP VHRSLSLAAA PGLAARPFSL VQETYKGDPY AEAAAEVLPT YFAYSGSGSV TAEVVYANYG HNEDYAYLAS RGVDVVGKVA
201: LVRYGDIHCE DMVRNARAAG AAAAIVYTDA KDFGGSAAKG EKRKWFPDAR WLPPTGVQVG TLYYGNGDPT TPLWPSCAAG DDCERLSMEE LDGSEEMPGI
301: PALPVSARDG ETILKAMGGD VAPPKWQGGD GAPVYRLGPG PAVLNLTYIV SASVGNETLA TIENVFAVIE GKEEPDRYVI IGNHRDAWTF GAVDPNSGTA
401: AMLEIAERLS KLQAKGWRPR RTIILCSWDA EEFALIGSTE WAEENMDTLA SRAIAYLNVD ISVFGPGGLM PRATPQLDEL IKEASKMVPD PDEPSQTLYD
501: TMMRHHPPIT RVAGAGTDFA AFVQHIGVPS LDMSYGLFEE YPVYHSLYDD YVWVERFGDP LFHRHVAVAS VWGLIALKLA DDEIIPFNYV SYASELEECT
601: KDIVDKCKGF PVSFSPLQNS IKQLESAATK IYKEKKLLQA ENWSLKTSKY TLKVREINDR LMMAERAFTN REGLVGRPWY KHMIYASSDQ DDWGTKAFPG
701: IVSAMDKAKK SNTTETWRLL QHEIYRVARA VSKASAVLDG KLT

Best Arabidopsis Sequence Match ( AT4G07670.1 )
(BLAST)

001: MDTLSQVSLV VYANYGRVED FVRLKKDMGV NVSGAVVIAR YGQIYKVDIV NNAYEAGAVG VVIYTNKRDY GGDEWFPASK WMPPSGFQVG TVYNGLGDPT
101: TPGWASVDGC ERLSDEAVEL SGDVPLIPSL PVSAADAEVI LKTIVGDVGP GPGILNLSYI VTKIQNVIGV IEGEEEPDRY VILRNHRDTW TFRAVDPNSG
201: TAVLMEASKS YLQHIAQRLD KLQKRGWKPR RTIILCNWDA EEYGLVSSLS EISYWLFFFI IVYTNTSNIS LKLHWKQNES

Arabidopsis Description

F10A2.10 protein [Source:UniProtKB/TrEMBL;Acc:Q9XH28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.