Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 7
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400016765

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G07670.1 PGSC0003DMT400016765 AT1G26830.1 15749712
AT4G07670.1 PGSC0003DMT400016765 AT1G69670.1 15749712
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g008550.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 33.77 90.35
Solyc12g008540.1.1 Tomato extracellular 9.52 78.57
KRH74232 Soybean endoplasmic reticulum, plastid 49.93 69.06
CDY42292 Canola endoplasmic reticulum, plasma membrane 63.92 65.53
AT5G19740.1 Thale cress vacuole 64.21 65.35
CDX92505 Canola plasma membrane, plastid 62.63 64.87
VIT_11s0016g03010.t01 Wine grape cytosol 71.57 64.33
CDY35864 Canola plasma membrane, plastid 61.76 64.07
KRH74227 Soybean cytosol 18.76 63.11
AT4G07670.1 Thale cress cytosol 25.25 62.5
GSMUA_Achr9P06030_001 Banana endoplasmic reticulum 59.6 60.91
Os01t0740600-01 Rice cytosol 7.22 57.47
EES01459 Sorghum cytosol, endoplasmic reticulum, peroxisome, plastid 57.86 55.23
Os01t0743300-01 Rice cytosol, endoplasmic reticulum, plasma membrane 57.43 54.67
TraesCS3A01G275800.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 57.14 54.62
Zm00001d012765_P005 Maize extracellular 56.85 54.34
TraesCS3D01G275800.2 Wheat cytosol, endoplasmic reticulum, plasma membrane 57.0 52.67
TraesCS3B01G309500.4 Wheat cytosol, endoplasmic reticulum, plasma membrane 56.85 52.53
TraesCS3B01G311000.1 Wheat plastid 54.83 52.13
TraesCS3D01G277000.1 Wheat plastid 54.69 51.99
Os01t0740500-00 Rice plastid 54.69 51.85
TraesCS3A01G276800.2 Wheat plastid 54.11 51.44
KXG33331 Sorghum endoplasmic reticulum, plasma membrane, plastid 54.26 51.37
Os01t0740650-00 Rice cytosol, mitochondrion, plasma membrane, plastid 33.48 51.33
Zm00001d043517_P002 Maize mitochondrion 54.69 51.01
TraesCS3D01G276900.1 Wheat plastid 54.83 50.94
Zm00001d043519_P004 Maize plastid 53.68 50.82
TraesCS3D01G275700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, nucleus 56.13 50.13
TraesCS3B01G310900.1 Wheat cytosol 54.69 47.38
TraesCS3A01G276700.1 Wheat cytosol 53.82 46.51
CDY44276 Canola plastid 10.39 43.11
HORVU5Hr1G103870.2 Barley mitochondrion 7.5 13.61
Protein Annotations
Gene3D:1.20.930.40EntrezGene:102606327MapMan:19.4.5.7.3Gene3D:3.40.630.10Gene3D:3.50.30.30ncoils:Coil
InterPro:IPR036757UniProt:M0ZHM7MEROPS:M28.A02InterPro:PA_domainPFAM:PF02225PFAM:PF04253
PFAM:PF04389EnsemblPlantsGene:PGSC0003DMG400000356PGSC:PGSC0003DMG400000356EnsemblPlants:PGSC0003DMT400000952PANTHER:PTHR10404PANTHER:PTHR10404:SF45
InterPro:Peptidase_M28SUPFAM:SSF47672SUPFAM:SSF52025SUPFAM:SSF53187SignalP:SignalP-noTMInterPro:TFR-like_dimer_dom
InterPro:TFR-like_dimer_dom_sfUniParc:UPI000295C3F8RefSeq:XP_006353498.1SEG:seg::
Description
Peptidase M28 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000356]
Coordinates
chr12:-:4004060..4009926
Molecular Weight (calculated)
76529.1 Da
IEP (calculated)
5.501
GRAVY (calculated)
-0.216
Length
693 amino acids
Sequence
(BLAST)
001: MTKLTFFTFI VLATSISFIF LETPPKSFYH TLFISDSFSD NSSIANHLYT LTKRPHVAGS QANADAAAYV LSIFTSCNIP SHLTSYDVAL TYPVSRSLTL
101: KSSEKTIKFG LFQEIYDGDP YAEVANEVLP TFHAYARSGT ATGPVVYANY GRVEDYATLR EMGVNVSNTV VLARYGKIYR GDIVHNAHAV GAIGVLIFTD
201: KKDYGGEKWF PDDKWMPPSG VQVGSVYDGI GDPTTPGWPS TGECERLSDE EVDEGGNVPL IPSLPISWAD GDAIIRTIGG KVANVDWQGG KDSPIYRVGP
301: GPAIANLSYE GQQVISTIQN VIAVIEGEEE PDRFVILGNH RDAWTFGAVD PNSGTASLLE IAQRLEKLQK RGWRPRRTII LCNWDAEEYG LIGSTEWVEE
401: NREMLAARVV AYLNVDCAVQ AGDFRASATP QLDELIILAS QQVQDPDNSS QTIYQSWLAS GNDTTVKLGR LGGSGSDYAA FVQHIGAPAV DMSFGQGYPI
501: YHSMYDDFVW MKKFGDPMFH RHVAAASIWG LVALRLADDE VLPFNYLSYA YELQKSAEHL EAEISDKGIS LVPLYASIEK LRKAATRIKN DIKALKAKRS
601: RASMRELNDR LIMTERAFTD RDGLSSRTWY KHLIYAPAKH DDYGSKSFPG ISDAIENAKS LNSSDSWHSV QHEVWRVARA ITQASLVLSG RLT
Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)
001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I
Arabidopsis Description
LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.