CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	CDY16196	AT1G26830.1	15749712
AT4G07670.1	CDY45004	AT1G26830.1	15749712
AT4G07670.1	CDY46437	AT1G26830.1	15749712
AT4G07670.1	CDY50732	AT1G26830.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35864	Canola	plasma membrane, plastid	90.73	90.87
CDY42292	Canola	endoplasmic reticulum, plasma membrane	80.87	80.03
AT5G19740.1	Thale cress	vacuole	80.12	78.71
Solyc12g008540.1.1	Tomato	extracellular	8.82	70.24
AT4G07670.1	Thale cress	cytosol	29.15	69.64
KRH74232	Soybean	endoplasmic reticulum, plastid	48.73	65.07
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	64.87	62.63
KRH74227	Soybean	cytosol	18.98	61.65
CDY44276	Canola	plastid	14.95	59.88
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.17	59.85
VIT_11s0016g03010.t01	Wine grape	cytosol	65.77	57.07
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	57.1	56.34
Os01t0740600-01	Rice	cytosol	7.03	54.02
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.85	53.38
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	57.25	52.75
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	57.25	52.61
Zm00001d012765_P005	Maize	extracellular	56.35	52.0
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.55	51.33
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.4	51.2
Os01t0740500-00	Rice	plastid	55.9	51.16
TraesCS3B01G311000.1	Wheat	plastid	54.56	50.07
TraesCS3D01G277000.1	Wheat	plastid	54.41	49.93
TraesCS3A01G276800.2	Wheat	plastid	54.26	49.79
Zm00001d043519_P004	Maize	plastid	53.66	49.04
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.8	48.97
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	53.51	48.91
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	32.88	48.67
Zm00001d043517_P002	Maize	mitochondrion	53.81	48.45
TraesCS3D01G276900.1	Wheat	plastid	53.06	47.59
CDX76133	Canola	cytosol	31.09	44.92
TraesCS3B01G310900.1	Wheat	cytosol	53.06	44.38
TraesCS3A01G276700.1	Wheat	cytosol	52.91	44.14
CDX78257	Canola	plastid	41.41	39.29
CDX73456	Canola	plastid	41.11	39.17
CDX76132	Canola	plastid	7.62	25.63
CDY35863	Canola	plastid	7.92	18.93
HORVU5Hr1G103870.2	Barley	mitochondrion	7.92	13.87

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	EnsemblPlants:CDX92505	ProteinID:CDX92505
ProteinID:CDX92505.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00154283001	InterPro:IPR036757	InterPro:PA_domain	PFAM:PF02225
PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28	SUPFAM:SSF47672
SUPFAM:SSF52025	SUPFAM:SSF53187	SignalP:SignalP-noTM	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	TMHMM:TMhelix
UniParc:UPI0004EE982E	SEG:seg	:	:	:	:

Description

BnaA10g15440D

Coordinates

chrLK031872:-:979029..981843

Molecular Weight (calculated)

73072.1 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.213

Length

669 amino acids

Sequence
(BLAST)

001: MSKPTTALLF LIAAFSYFLF SPSPKPHYYH TLFLSSPFSD NASIASNLRT LTRRPHVAGS LANAEAASHV LSSFASSSLK SHLVAYKVSL TYPVHRSLSL
101: LKASSSKPII TFSLEQEHLG DNPYADEVTP TFHAYAKSGD VSGPAAYANY GRVEDFLGLN VSGAVVVARY GEIYRGDIVR NAYEAGAVGV VIYTDERDYG
201: GGDECFPESK WMPPSGVQVG TVYKGLGDPT TPGWASVDGC ERVSEEGVEL RGDSPGIPSL PISAADAEVI LKSVVGGVGP GPGILNLSYV GKSVIAEIEN
301: VIGVIEGEEE PDRYVILGNH RDAWTFGAVD PNSGTAVLLE IAQRLDKLQK RGWKPRRTII LCNWDAEEYA LIGSTEWVEE NREMLASRAV AYLNADCAVS
401: GPGFRASATP QLDDLIKQVA KEVRDPDNTT QSIYESWIRS NNSGVIGRLG SGASDYASFV QHVGVPAVDM LFGGGYPVYH SMYDDFTWME KFGDPMFQRH
501: VAIASVLGLV ALRLADDEFL PFNYSSYASE LKKSAEDLEK EMLGHSIDAS PLIKSIQDLS TAAQEINIEK EEGVKGALRV RELNDRLMMA ERALTDRDGL
601: SGRTWYKHLV YGPSKYDDYG SKSFPGVDDA VDTAKRVKTK ASWEHVQHEI WRVSRAIRHA SLVLKGELR

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.