Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44276 | Canola | plastid | 7.14 | 11.98 |
| CDX78257 | Canola | plastid | 20.36 | 8.09 |
| CDX92505 | Canola | plasma membrane, plastid | 18.93 | 7.92 |
| CDX73456 | Canola | plastid | 19.64 | 7.83 |
| CDX76133 | Canola | cytosol | 12.86 | 7.78 |
| CDY42292 | Canola | endoplasmic reticulum, plasma membrane | 18.57 | 7.69 |
| CDY35864 | Canola | plasma membrane, plastid | 18.21 | 7.63 |
| CDX76132 | Canola | plastid | 3.21 | 4.52 |
Protein Annotations
| EnsemblPlants:CDY35863 | EnsemblPlantsGene:GSBRNA2T00059397001 | GO:A0A078HG95 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Mpv17_PMP22 | PANTHER:PTHR11266 | PANTHER:PTHR11266:SF17 | PFAM:PF04117 | ProteinID:CDY35863 | ProteinID:CDY35863.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDB7E8 | UniProt:A0A078HG95 | MapMan:35.2 | : |
Description
BnaC09g37950DBnaC09g37950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG95]
Coordinates
chrLK032362:-:357858..359588
Molecular Weight (calculated)
29779.0 Da
IEP (calculated)
10.667
GRAVY (calculated)
0.270
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSDATFTRR TPLTLSSLGV SGNHNRKILT GDGSSRALSF GYKHGSLSSA RINWSGRFGT GFGHLVRVSS VSGGGSGGSG GIGGSGGDSS GGGGEDSGGN
101: GNKWSFLSWY LALLSDYPVL TKSVTSALLT LIGDLICQLT INKTSSLDKK RTLTFTILGF GLVGPALHFW YLYLSKVVTA SGLSGAVLRL LLDQFVFAPV
201: FVGVFLSAVV TLEGKPSNVI PKLKQEWTGA VLANWQLWIP FQFLNFRFVP QNFQVLASNV VALAWNVILS FKAHKEVVPK
101: GNKWSFLSWY LALLSDYPVL TKSVTSALLT LIGDLICQLT INKTSSLDKK RTLTFTILGF GLVGPALHFW YLYLSKVVTA SGLSGAVLRL LLDQFVFAPV
201: FVGVFLSAVV TLEGKPSNVI PKLKQEWTGA VLANWQLWIP FQFLNFRFVP QNFQVLASNV VALAWNVILS FKAHKEVVPK
001: MLNSITLTRK PPLPFNSVGF SGNHSSSFGR RTITEGSSSK ALSFGYKNVG SLKCGRSNWP GRSGTAFGHL VRVSAVPGGN SGGSGGLGGS GGGGGGSGGG
101: GGDGSDGKGK KWSLLSWYQA LLSNSPVLTK AVTAALLNLV GDLICQLTIN KTSSLDKKRT LTFTFLGLGL VGPTLHFWYL YLSKVVTASG LSGAVIRLLL
201: DQFVFAPIFV GVFLSAVVTL EGKPSNVIPK LQQEWTGAMI ANWQLWIPFQ FLNFRFVPQN YQVLASNVVA LAWNVILSFK AHKEVVAK
101: GGDGSDGKGK KWSLLSWYQA LLSNSPVLTK AVTAALLNLV GDLICQLTIN KTSSLDKKRT LTFTFLGLGL VGPTLHFWYL YLSKVVTASG LSGAVIRLLL
201: DQFVFAPIFV GVFLSAVVTL EGKPSNVIPK LQQEWTGAMI ANWQLWIPFQ FLNFRFVPQN YQVLASNVVA LAWNVILSFK AHKEVVAK
Arabidopsis Description
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Source:UniProtKB/TrEMBL;Acc:F4K2L8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.