Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g010820.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07670.1 | Solyc01g010820.2.1 | AT1G26830.1 | 15749712 |
| AT4G07670.1 | Solyc01g010820.2.1 | AT1G69670.1 | 15749712 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G07670.1 | Thale cress | cytosol | 61.9 | 18.57 |
| CDY44276 | Canola | plastid | 26.19 | 13.17 |
| KRH74232 | Soybean | endoplasmic reticulum, plastid | 71.43 | 11.98 |
| Os01t0740650-00 | Rice | cytosol, mitochondrion, plasma membrane, plastid | 58.33 | 10.84 |
| PGSC0003DMT400000952 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 78.57 | 9.52 |
| CDX92505 | Canola | plasma membrane, plastid | 70.24 | 8.82 |
| CDY35864 | Canola | plasma membrane, plastid | 67.86 | 8.53 |
| AT5G19740.1 | Thale cress | vacuole | 69.05 | 8.52 |
| CDY42292 | Canola | endoplasmic reticulum, plasma membrane | 66.67 | 8.28 |
| GSMUA_Achr9P06030_001 | Banana | endoplasmic reticulum | 64.29 | 7.96 |
| Solyc11g045250.1.1 | Tomato | plastid | 53.57 | 7.67 |
| Zm00001d012765_P005 | Maize | extracellular | 65.48 | 7.59 |
| VIT_11s0016g03010.t01 | Wine grape | cytosol | 69.05 | 7.52 |
| TraesCS3A01G275800.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 64.29 | 7.45 |
| TraesCS3D01G275800.2 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 65.48 | 7.33 |
| EES01459 | Sorghum | cytosol, endoplasmic reticulum, peroxisome, plastid | 63.1 | 7.3 |
| TraesCS3B01G309500.4 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 64.29 | 7.2 |
| Os01t0743300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 61.9 | 7.14 |
| Zm00001d043517_P002 | Maize | mitochondrion | 60.71 | 6.86 |
| Os01t0740500-00 | Rice | plastid | 59.52 | 6.84 |
| TraesCS3D01G275700.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 63.1 | 6.83 |
| TraesCS3D01G277000.1 | Wheat | plastid | 58.33 | 6.72 |
| TraesCS3A01G276800.2 | Wheat | plastid | 58.33 | 6.72 |
| TraesCS3B01G311000.1 | Wheat | plastid | 58.33 | 6.72 |
| TraesCS3D01G276900.1 | Wheat | plastid | 59.52 | 6.7 |
| KXG33331 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 57.14 | 6.56 |
| Zm00001d043519_P004 | Maize | plastid | 55.95 | 6.42 |
| TraesCS3B01G310900.1 | Wheat | cytosol | 59.52 | 6.25 |
| TraesCS3A01G276700.1 | Wheat | cytosol | 58.33 | 6.11 |
| HORVU5Hr1G103870.2 | Barley | mitochondrion | 13.1 | 2.88 |
| Solyc12g008550.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 0.0 | 0.0 |
| Solyc11g045240.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Os01t0740600-01 | Rice | cytosol | 0.0 | 0.0 |
| KRH74227 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc12g008540.1.1 | EnsemblPlantsGene:Solyc12g008540.1 | Gene3D:3.40.630.10 | InterPro:Peptidase_M28 | PANTHER:PTHR10404 | PANTHER:PTHR10404:SF45 |
| PFAM:PF04389 | SUPFAM:SSF53187 | UniParc:UPI000276956D | UniProt:K4DBU2 | MapMan:19.4.5.7.3 | : |
Description
No Description!
Coordinates
chr12:+:1947557..1949532
Molecular Weight (calculated)
9644.8 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.161
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MAIHMQRWLM KYYLPFMLML DQGQQVISTI QNVIGVIEGE QEPDRFVILG NHRDAWTFGA VDPNSGTASL LEIAQRLEKL QKRG
001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I
Arabidopsis Description
LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.