Factsheet for TraesCS3A01G275800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

endoplasmic reticulum 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	96.14	92.93
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.03	88.79
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	93.1	88.35
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	82.48	82.14
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	80.28	80.17
Zm00001d012765_P005	Maize	extracellular	79.17	79.17
Solyc12g008540.1.1	Tomato	extracellular	7.45	64.29
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	56.55	60.47
TraesCS3A01G276800.2	Wheat	plastid	60.14	59.81
KRH74232	Soybean	endoplasmic reticulum, plastid	40.14	58.08
CDY35864	Canola	plasma membrane, plastid	53.38	57.93
CDX92505	Canola	plasma membrane, plastid	53.38	57.85
CDY42292	Canola	endoplasmic reticulum, plasma membrane	53.79	57.69
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	54.62	57.14
AT5G19740.1	Thale cress	vacuole	53.38	56.83
KRH74227	Soybean	cytosol	16.0	56.31
AT4G07670.1	Thale cress	cytosol	20.97	54.29
TraesCS3A01G276700.1	Wheat	cytosol	59.86	54.11
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.9	52.9
VIT_11s0016g03010.t01	Wine grape	cytosol	55.45	52.14
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	39.45	40.17
CDY44276	Canola	plastid	8.83	38.32

Protein Annotations

EnsemblPlants:TraesCS3A01G275800.1	EnsemblPlantsGene:TraesCS3A01G275800	Gene3D:1.20.930.40	Gene3D:3.40.630.10	Gene3D:3.50.30.30	InterPro:IPR036757
InterPro:PA_domain	InterPro:Peptidase_M28	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45
PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	SEG:seg	SUPFAM:SSF47672	SUPFAM:SSF52025
SUPFAM:SSF53187	TIGR:cd02121	TIGR:cd08022	MapMan:19.4.5.7.3	:	:

Description

No Description!

Coordinates

chr3A:-:505232115..505238645

Molecular Weight (calculated)

78439.8 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.130

Length

725 amino acids

Sequence
(BLAST)

001: MPPPLGDDDS CLLTPLIPAS PPPLPPRATA RLHPLPLLVG ALFATYYHLL VAPAPSYYQS LFLSLGCNDT AAAHLRALTV RPHLAGTEAN ALAADHVVST
101: LSSLSFPTRV TPYEVLLSYP VRRSLSLSAP GHATTTFALV QDTYPGDPYA AASAEVVPTF LAYAASGSAA AEVVYANYGR TEDYAYLASR GVNVTGKVAL
201: ARYGKVYRGD IVINARDAGA AAAVIFTDAK DYTPGKAFPD GPWMPATGVQ VGSTFKGVGD PTTPMWASSE GCERVSIAEA MATDDMPGIP ALPVSGRDGE
301: EILRLVGGDV APEDWQGGEG APVYHLGPGP AVLNLSYTGN ETIATIQNVI SVIEGKEEPD RYVILGNHRD AWTFGAADPN SGTAALLELA ERLSKLQTKG
401: WRPRRTIILC NWDAEEYGLI GSTEWVEENR AMLTSRTVAY LNVDVGVSGS GVDASATPQL DQLLKQASKK VQNPDNGTES LYDMWMASDS SLIGRLGGGG
501: SDYSAFVQHI GIPSVDMAIG SGYAVYHSLY DDFTWMEKYG DPMFRRHVAV ASIWGLVALR LSDEEILPFN YSSYVTELEN GAVDINKRVL GMPVSLSPLH
601: KSIKQLNRAV LKVDSELQAL QTWKFWSPWR NDRLRVRDLN DRLMMTERAF TEREGLSGRP WYKHMIYGPS LYNDYGAEVY PGVDDAIQTA KKTSTSESWQ
701: SVQHEIHRIA RVISQAALVL SGGLT

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.