CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99095
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	KRG99095	AT1G26830.1	15749712
AT4G07670.1	KRH45896	AT1G26830.1	15749712
AT4G07670.1	KRH70713	AT1G26830.1	15749712
AT4G07670.1	KRG99095	AT1G69670.1	15749712
AT4G07670.1	KRH45896	AT1G69670.1	15749712
AT4G07670.1	KRH70713	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0740600-01	Rice	cytosol	21.84	51.72
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.49	40.15
CDY35864	Canola	plasma membrane, plastid	62.14	19.16
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	62.62	19.03
CDX92505	Canola	plasma membrane, plastid	61.65	18.98
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	63.11	18.76
CDY42292	Canola	endoplasmic reticulum, plasma membrane	61.16	18.64
VIT_11s0016g03010.t01	Wine grape	cytosol	69.42	18.55
AT5G19740.1	Thale cress	vacuole	59.71	18.06
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	58.25	16.53
Zm00001d012765_P005	Maize	extracellular	57.28	16.28
TraesCS3A01G275800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	56.31	16.0
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	56.31	15.93
TraesCS3B01G309500.4	Wheat	cytosol, endoplasmic reticulum, plasma membrane	54.85	15.07
TraesCS3D01G275800.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane	54.85	15.07
TraesCS3A01G276800.2	Wheat	plastid	52.91	14.95
TraesCS3D01G276900.1	Wheat	plastid	53.88	14.88
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.83	14.82
TraesCS3B01G311000.1	Wheat	plastid	52.43	14.81
TraesCS3D01G277000.1	Wheat	plastid	52.43	14.81
Zm00001d043517_P002	Maize	mitochondrion	51.94	14.4
Os01t0740500-00	Rice	plastid	50.97	14.36
KXG33331	Sorghum	endoplasmic reticulum, plasma membrane, plastid	50.49	14.21
TraesCS3B01G310900.1	Wheat	cytosol	54.37	14.0
TraesCS3A01G276700.1	Wheat	cytosol	53.4	13.72
Zm00001d043519_P004	Maize	plastid	47.57	13.39
KRH32940	Soybean	plastid	42.23	12.52
KRH68064	Soybean	endoplasmic reticulum	40.78	12.1
KRG96329	Soybean	plasma membrane	40.29	11.93
Os01t0740650-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	19.42	8.85
AT4G07670.1	Thale cress	cytosol	2.91	2.14
KRH07659	Soybean	cytosol, extracellular, plastid	0.97	1.68
CDY44276	Canola	plastid	0.49	0.6
HORVU5Hr1G103870.2	Barley	mitochondrion	0.49	0.26
KRH74232	Soybean	endoplasmic reticulum, plastid	0.49	0.2
Solyc12g008540.1.1	Tomato	extracellular	0.0	0.0
KRH03146	Soybean	mitochondrion	0.0	0.0

Protein Annotations

EMBL:ACUP02000009	EnsemblPlants:KRH74227	EnsemblPlantsGene:GLYMA_01G0067002	Gene3D:1.20.930.40	Gene3D:3.40.630.10	InterPro:IPR036757
InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	ncoils:Coil	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	PFAM:PF04253
ProteinID:KRH74227	ProteinID:KRH74227.1	SUPFAM:SSF47672	SUPFAM:SSF53187	UniParc:UPI0006EDCEE2	UniProt:A0A0R0LAX2
MapMan:19.4.5.7.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:652561..654690

Molecular Weight (calculated)

23751.4 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.323

Length

206 amino acids

Sequence
(BLAST)

001: VAGYPVYHSL YDDFVWMEKF GDPMFQRHVA AASVWGLVAL WLADEEFLPF DYLSYAKELQ LSVENLEDEI SNKDINLSPI FKSIKGLEKA AIKIDSQRKE
101: IEAGKGWITG KKDHLRVREL NDRLMMAERA FTDRDGLFGM SWYKHLIYGP SKHNDYGSQS FPGIDDAVKM AKNLHTAESW HRVQHEVWRV SRVIKQASLV
201: LFGLLS

Best Arabidopsis Sequence Match ( AT5G19740.1 )
(BLAST)

001: MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV
101: LTPTDSAKPI TFLLEQEKLG DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY RGDIVKNAYE AGAVGVVIYT
201: DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL
301: SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS
401: RAVAYLNVDC AVSGPGFHAS ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG VDMSFGRGYP VYHSMYDDFT
501: WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM
601: MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH QIWRVSRAIR HASLVLKGEL I

Arabidopsis Description

LAMP1Probable glutamate carboxypeptidase LAMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y228]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.