Factsheet for TraesCS3D01G275800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07670.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G07670.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G07670.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G070790.1	Barley	peroxisome, plasma membrane	91.2	89.53
TraesCS3D01G275700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.33	88.27
Os01t0743300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	79.87	82.28
EES01459	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	78.8	81.41
Zm00001d012765_P005	Maize	extracellular	77.73	80.41
Solyc12g008540.1.1	Tomato	extracellular	7.33	65.48
GSMUA_Achr9P06030_001	Banana	endoplasmic reticulum	54.93	60.77
TraesCS3D01G277000.1	Wheat	plastid	58.27	59.95
KRH74232	Soybean	endoplasmic reticulum, plastid	39.07	58.48
TraesCS3D01G276900.1	Wheat	plastid	58.0	58.31
CDX92505	Canola	plasma membrane, plastid	51.33	57.55
CDY42292	Canola	endoplasmic reticulum, plasma membrane	51.87	57.54
CDY35864	Canola	plasma membrane, plastid	51.2	57.48
PGSC0003DMT400000952	Potato	endoplasmic reticulum, plasma membrane, vacuole	52.67	57.0
AT5G19740.1	Thale cress	vacuole	51.47	56.68
AT4G07670.1	Thale cress	cytosol	20.67	55.36
KRH74227	Soybean	cytosol	15.07	54.85
Solyc12g008550.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.0	52.12
VIT_11s0016g03010.t01	Wine grape	cytosol	53.47	52.01
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	37.87	39.89
CDY44276	Canola	plastid	8.4	37.72

Protein Annotations

Gene3D:1.20.930.40	MapMan:19.4.5.7.3	Gene3D:3.40.630.10	Gene3D:3.50.30.30	InterPro:IPR036757	InterPro:PA_domain
PFAM:PF02225	PFAM:PF04253	PFAM:PF04389	PANTHER:PTHR10404	PANTHER:PTHR10404:SF45	InterPro:Peptidase_M28
SUPFAM:SSF47672	SUPFAM:SSF52025	SUPFAM:SSF53187	InterPro:TFR-like_dimer_dom	InterPro:TFR-like_dimer_dom_sf	EnsemblPlantsGene:TraesCS3D01G275800
EnsemblPlants:TraesCS3D01G275800.2	TIGR:cd02121	TIGR:cd08022	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:382498575..382505547

Molecular Weight (calculated)

81365.3 Da

IEP (calculated)

5.763

GRAVY (calculated)

-0.163

Length

750 amino acids

Sequence
(BLAST)

001: MPPPLGGDDS CLLTPLIPAT PPPLPPRATA RLHPLPLLVG ALFATYYHLL VAPAPSYYQS LFLSLGSNDT AAAHLRALTV RPHLAGTEAN ALAADHVVST
101: LSSLSFPTRV TPYEVLLSYP VGRSLSLSAP GRDATAFALV QDTYPGDPYA AASAEVVPTF LAYAASGSAA AEVVYANYGR REDYAYLASR GVNVTGKVAL
201: ARYGKVYRGD IVKNARDAGA AAAVIFTDPK DYTPGKAFPD GPWMPPTGVQ VGSTFKGVGD PTTPMWASSE GCERVSVAKA MSTDDMPGIP ALPVSGRDGE
301: EILRLVGGDV APEDWQGGDG APVYRLGPGP AVLNLTYTGN ETIATIQNVI SVIEGKEEPD RYVILGNHRD AWTFGAADPN SGTAALLELA QRLSKLQNKG
401: WRPRRTIILC NWDAEEYGLI GSTEWVEENR AMLTSRTVAY LNVDVGVSGS GVDASATPQL DELLKQASKK VQNPDNGTES LYDLWMASDS SLIGRLGGGG
501: SDYSAFVQHI GIPSVDMAIG SGYAVYHSLY DDFTWMEKYG DPMFRRHVAV ASIWGLVALR LSDEEILPFN YSSYATELEN GAVDINKRVL GMPVSLSPLH
601: RSIKQFNRAV LKVDSELQAL QTWKFWSPWR NNPLRVRDLN DRLMMTERAF TEWEGLSGRP WYKHMVSCGF GKIRSWFITY HHAYGKEIMQ IYGPSLYNDY
701: GAEVYPGADD AIQTAKKTNT SESWQSVQHE IHRIARVISQ AALVLSGGLT

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.