Factsheet for VIT_00s0285g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
extracellular 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0327g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	60.42	80.07
VIT_00s0352g00020.t01	Wine grape	mitochondrion	59.63	79.3
VIT_11s0065g00570.t01	Wine grape	cytosol	25.59	77.6
VIT_00s0319g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane	60.16	75.0
KRH03146	Soybean	mitochondrion	18.21	69.7
VIT_08s0032g00670.t01	Wine grape	cytosol	62.8	57.77
KRH07659	Soybean	cytosol, extracellular, plastid	17.68	56.3
GSMUA_Achr4P31300_001	Banana	cytosol	44.85	43.7
Solyc11g045250.1.1	Tomato	plastid	67.02	43.27
CDX76133	Canola	cytosol	52.51	42.98
HORVU5Hr1G103900.13	Barley	cytosol	39.31	37.25
KRH68064	Soybean	endoplasmic reticulum	67.02	36.6
KRG96329	Soybean	plasma membrane	66.75	36.35
KRH32940	Soybean	plastid	63.85	34.82
TraesCS5D01G435600.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	58.84	31.32
Bra007091.1-P	Field mustard	plastid	58.05	31.21
CDX73456	Canola	plastid	57.52	31.05
TraesCS5B01G429500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	58.31	31.04
TraesCS5A01G427500.1	Wheat	endoplasmic reticulum, plasma membrane	58.31	31.04
EER93326	Sorghum	plasma membrane, vacuole	57.78	30.8
CDX78257	Canola	plastid	57.26	30.78
Bra014794.1-P	Field mustard	plastid	56.46	30.62
AT3G54720.1	Thale cress	plastid	56.73	30.5
Zm00001d034383_P003	Maize	plasma membrane, plastid, vacuole	56.99	30.29
Os03t0790600-01	Rice	mitochondrion	58.58	28.76
GSMUA_Achr5P02690_001	Banana	mitochondrion	51.45	27.94
VIT_11s0016g03010.t01	Wine grape	cytosol	47.49	23.35
HORVU6Hr1G029960.1	Barley	mitochondrion	9.76	19.27
HORVU3Hr1G080240.1	Barley	plastid	12.93	16.28
HORVU3Hr1G104570.2	Barley	plastid	12.66	15.95
HORVU5Hr1G007810.6	Barley	endoplasmic reticulum, plasma membrane, plastid	12.66	15.89
Solyc11g045240.1.1	Tomato	cytosol	0.53	2.47
CDX76132	Canola	plastid	1.06	2.01

Protein Annotations

ArrayExpress:VIT_00s0285g00060	EMBL:FN595264	EnsemblPlants:VIT_00s0285g00060.t01	EnsemblPlantsGene:VIT_00s0285g00060	Gene3D:3.40.630.10	Gene3D:3.50.30.30
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Peptidase_M28	PANTHER:PTHR10404	PANTHER:PTHR10404:SF63
PFAM:PF04389	ProteinID:CCB48372	ProteinID:CCB48372.1	SEG:seg	SUPFAM:SSF52025	SUPFAM:SSF53187
TMHMM:TMhelix	unigene:Vvi.24955	UniParc:UPI000210A0B8	UniProt:F6H829	MapMan:19.4.5.7.3	:

Description

No Description!

Coordinates

chrUn:-:21368507..21378831

Molecular Weight (calculated)

42360.9 Da

IEP (calculated)

5.207

GRAVY (calculated)

0.007

Length

379 amino acids

Sequence
(BLAST)

001: MGCVAVVRRR EESRGGVVGR AVEEGVVVVL MYTKGESMSG VERGTVMKVL GDPLTLGWGG EALDLEDSHI LNRFPKIPSM PISPEVAYSI LRSLEGPQMP
101: HHWRGDALGP QPGPTLLNFT YQAEKKIATI HNVFAVIRGS EEPDCYVLLG NHRDAWTYEA VDPNSGTVVL LDIARRYALM MRQGWQPRRT IVLCSWDAEE
201: FGMIGSTEWV EQNLLNLGSK VVAYLNVDCA VQGPGFFAGA TPQLDNLLIE VAKKVQDPDS ESMTIYDNWM ITNKVINIQR LSGVDSDFAP LLQHAGVPSV
301: DLYYGRVFPV YHTAFDSYNW MTNHGDPLFQ RHVAARVWGL LALHLVDDPI LPFNYVSYTE QLWVGICFLS FIIAYFLSH

Best Arabidopsis Sequence Match ( AT3G54720.1 )
(BLAST)

001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT

Arabidopsis Description

AMP1Probable glutamate carboxypeptidase AMP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.