Factsheet for Zm00001d007068_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	Zm00001d018043_P001	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022366_P001	Maize	plastid	96.95	97.87
EER99824	Sorghum	plastid	97.42	97.42
HORVU2Hr1G023850.1	Barley	cytosol, plastid	83.33	90.56
Os07t0655300-01	Rice	plastid	90.61	88.94
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	86.15	86.35
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	86.15	86.35
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	85.92	86.12
VIT_07s0104g00570.t01	Wine grape	cytosol	72.07	76.37
GSMUA_Achr6P23740_001	Banana	plastid	74.18	75.96
GSMUA_Achr6P16160_001	Banana	plastid	74.18	75.78
VIT_05s0020g02520.t01	Wine grape	plastid	71.6	74.75
PGSC0003DMT400009802	Potato	plastid	70.42	73.53
Solyc09g072980.2.1	Tomato	cytosol	70.89	73.3
KRG95474	Soybean	plastid	69.48	72.2
KRH31976	Soybean	plastid	69.95	72.16
KRH71465	Soybean	plastid	69.48	71.84
KRH67156	Soybean	plastid	67.84	70.49
CDY66705	Canola	cytosol	65.49	69.23
CDY58342	Canola	cytosol	65.02	68.73
Bra001186.1-P	Field mustard	cytosol	65.02	68.73
CDY08064	Canola	cytosol	65.26	68.3
Bra002200.1-P	Field mustard	cytosol	64.08	68.25
Bra006489.1-P	Field mustard	cytosol	64.55	68.24
CDY24708	Canola	cytosol	64.32	67.99
Bra040233.1-P	Field mustard	cytosol	61.97	67.87
Bra020764.1-P	Field mustard	cytosol	61.27	67.79
CDY05245	Canola	cytosol	62.68	67.42
AT3G06190.1	Thale cress	cytosol	64.08	67.24
Solyc01g080250.2.1	Tomato	plastid	63.38	66.34
PGSC0003DMT400011115	Potato	plastid	63.15	66.09
AT5G19000.2	Thale cress	plastid	67.37	64.93
CDX70860	Canola	cytosol	64.55	62.5
CDY13941	Canola	cytosol	64.32	62.41
CDX92567	Canola	cytosol	63.85	61.96
CDY18844	Canola	cytosol	62.21	61.77
CDY02591	Canola	cytosol	56.57	60.25
Zm00001d013094_P001	Maize	cytosol	52.82	52.57
Zm00001d034400_P003	Maize	cytosol	52.82	52.57
Zm00001d018887_P002	Maize	cytosol	52.35	51.62
Zm00001d007888_P002	Maize	plastid	47.89	47.44
Zm00001d024349_P001	Maize	cytosol	28.87	34.26

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100272403	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	UniProt:B4FNG2
InterPro:BPM_C	EMBL:BT038650	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	EMBL:KJ727917	InterPro:MATH/TRAF_dom	ProteinID:ONM25711.1
PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI00017B6C86
EnsemblPlantsGene:Zm00001d007068	EnsemblPlants:Zm00001d007068_P001	EnsemblPlants:Zm00001d007068_T001	SEG:seg	:	:

Description

math-btb16BTB/POZ and MATH domain-containing protein 2

Coordinates

chr2:-:221312374..221317785

Molecular Weight (calculated)

46434.7 Da

IEP (calculated)

6.932

GRAVY (calculated)

-0.069

Length

426 amino acids

Sequence
(BLAST)

001: MGAGRVCRGG PFSASPAAGA AAGRPFPPLT ASSSSSPSSA PSETASTSVT KTVNGSHHFK IAGYSLSKGI GVGKFIASES FNVGGFDWAI YFYPDGKSGE
101: DGAAYVSLFI ALASEGTDVR ALFELTLVDQ SGKGQDKVHT HFGRSLESGP YTLKYRGSMW GYKRFFKRVA LETSDYLKDD CLLVNCTVGV VQSHTEGPKI
201: YTIPVPRSNM ALHIGQLLTS GKRTDIAFEV DGEMFPAHKV ILSARSPVFR AQLFGPMKDK DMKCIKIEDM EAPVFKALLH FMYWDELPDL EELTGVNTTW
301: VSTLMAQHLL AAADRYALER LKLLCELKLC EDVAINTVAN TLALAEQHHC YQLKTVCLKF VALPENLKAV MQTDGFDYLQ QSCPSLLTEL LEYVAKIGEH
401: SVSPCLYSTE VLDGGDANGR RVKPRI

Best Arabidopsis Sequence Match ( AT5G19000.1 )
(BLAST)

001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH

Arabidopsis Description

BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.