Factsheet for VIT_05s0020g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	VIT_01s0026g02230.t01	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g00570.t01	Wine grape	cytosol	85.29	86.57
GSMUA_Achr6P16160_001	Banana	plastid	78.43	76.74
HORVU2Hr1G023850.1	Barley	cytosol, plastid	72.3	75.26
GSMUA_Achr6P23740_001	Banana	plastid	76.47	75.0
Bra001186.1-P	Field mustard	cytosol	73.53	74.44
CDY58342	Canola	cytosol	73.53	74.44
AT3G06190.1	Thale cress	cytosol	73.53	73.89
CDY08064	Canola	cytosol	73.53	73.71
Solyc01g080250.2.1	Tomato	plastid	72.79	72.97
Bra040233.1-P	Field mustard	cytosol	69.36	72.75
CDY05245	Canola	cytosol	70.59	72.73
PGSC0003DMT400011115	Potato	plastid	72.3	72.48
CDY66705	Canola	cytosol	71.57	72.46
CDY24708	Canola	cytosol	71.57	72.46
Zm00001d022366_P001	Maize	plastid	74.75	72.27
Bra006489.1-P	Field mustard	cytosol	71.32	72.21
Bra020764.1-P	Field mustard	cytosol	67.65	71.69
Zm00001d007068_P001	Maize	plastid	74.75	71.6
EER99824	Sorghum	plastid	74.75	71.6
Bra002200.1-P	Field mustard	cytosol	70.1	71.5
Os07t0655300-01	Rice	plastid	75.74	71.2
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	73.53	70.59
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	73.28	70.35
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	73.04	70.12
AT5G19000.2	Thale cress	plastid	74.75	69.0
CDX70860	Canola	cytosol	72.3	67.05
CDY18844	Canola	cytosol	69.36	65.97
CDY13941	Canola	cytosol	70.34	65.38
CDX92567	Canola	cytosol	70.1	65.15
CDY02591	Canola	cytosol	62.99	64.25
VIT_13s0019g02260.t01	Wine grape	cytosol	60.54	60.84
VIT_06s0009g01030.t01	Wine grape	cytosol	57.6	55.56
VIT_08s0056g01670.t01	Wine grape	plastid	55.88	52.9

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100240933	wikigene:100240933	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1
InterPro:BPM_C	InterPro:BTB/POZ_dom	ProteinID:CBI26169	ProteinID:CBI26169.3	UniProt:D7T6P8	EMBL:FN595749
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
EntrezGene:LOC100240933	wikigene:LOC100240933	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144
PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599
SUPFAM:SSF54695	TIGR:TC56331	InterPro:TRAF-like	UniParc:UPI0001983376	ArrayExpress:VIT_05s0020g02520	EnsemblPlantsGene:VIT_05s0020g02520
EnsemblPlants:VIT_05s0020g02520.t01	unigene:Vvi.12720	RefSeq:XP_002279548	RefSeq:XP_002279548.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:4194227..4204900

Molecular Weight (calculated)

45431.6 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.132

Length

408 amino acids

Sequence
(BLAST)

001: MGTVRACRET SKPSTSSPPP VTTTSTSRSE TVNGSHEFKI DGYSLAKGMG IGRYIASDTF MVGGYAWAIY FYPDGKSVED NAQYVSLFIA LASEGTDVRA
101: LFELSLLDQS GKDRHKVHSH FGRFLESGPY TLKYRGSMWG YKRFFKRTAL ETSDYLKNDC LLIRCSVGVV KSYTEGPKIY TIAVMPSNIG QHFGQLLESG
201: KGTDVNFEVD GEIFSAHKLV LAARSPVFRA QLFGPMKDCN TQLIKIEDME APVFKALLHF TYWDALPDMQ ELVGMNSKWA STMMAQHLLA AADRYGLDRL
301: RLLCEDKLCE DVAINTVATT LALAEQHHCF QLKAVCLKFV ALPENLKAVM QTDGFDYLKQ SCPSVLTELL EYVARIGEHS VIVCGHGNEN ILLDGSDVNG
401: RRVKQRIF

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.