Factsheet for VIT_08s0056g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25976	Sorghum	cytosol	25.29	90.08
KRG94896	Soybean	mitochondrion	77.03	76.85
KRH06640	Soybean	mitochondrion, plastid	76.8	76.27
VIT_06s0009g01030.t01	Wine grape	cytosol	74.25	75.65
GSMUA_Achr5P08970_001	Banana	cytosol	69.61	74.63
GSMUA_Achr4P14800_001	Banana	cytosol	67.98	74.55
GSMUA_Achr7P27230_001	Banana	cytosol	67.52	74.05
KRG94056	Soybean	cytosol	13.46	73.42
HORVU5Hr1G104190.1	Barley	cytosol	66.36	70.79
TraesCS2D01G246900.1	Wheat	cytosol, plastid	69.37	70.19
TraesCS2B01G262200.1	Wheat	cytosol	69.37	70.19
TraesCS2A01G237800.1	Wheat	cytosol	69.14	69.95
Os07t0167200-01	Rice	cytosol	68.68	69.81
Zm00001d013094_P001	Maize	cytosol	68.68	69.16
Bra036437.1-P	Field mustard	plastid	71.0	68.61
EER90755	Sorghum	cytosol	67.98	68.3
Zm00001d034400_P003	Maize	cytosol	67.75	68.22
CDY29955	Canola	plastid	70.77	67.93
KRG94053	Soybean	cytosol	29.23	67.38
KRG94052	Soybean	cytosol	29.23	67.38
Zm00001d018887_P002	Maize	cytosol	67.52	67.36
KXG34465	Sorghum	cytosol	68.21	66.67
KRG88614	Soybean	mitochondrion	48.26	66.67
KRG94050	Soybean	mitochondrion	58.0	66.14
KRG88615	Soybean	mitochondrion	57.77	65.87
TraesCS5A01G429400.2	Wheat	cytosol	66.36	65.45
HORVU2Hr1G055140.1	Barley	cytosol	69.61	65.36
KRG94064	Soybean	mitochondrion	57.31	65.34
KRG94047	Soybean	cytosol, mitochondrion, plastid	44.08	65.29
KRG94069	Soybean	cytosol	54.06	65.27
TraesCS5B01G431400.2	Wheat	cytosol	66.13	65.22
AT3G03740.1	Thale cress	cytosol	70.3	65.16
KRH06645	Soybean	cytosol	58.93	64.14
KRG88616	Soybean	cytosol	34.11	62.82
TraesCS5D01G437400.1	Wheat	cytosol	66.82	62.47
KRG94057	Soybean	mitochondrion	26.22	61.75
CDY67137	Canola	endoplasmic reticulum	49.88	60.39
KRG94058	Soybean	mitochondrion	51.28	58.78
VIT_07s0104g00570.t01	Wine grape	cytosol	54.06	57.96
VIT_05s0020g02520.t01	Wine grape	plastid	52.9	55.88
VIT_13s0019g02260.t01	Wine grape	cytosol	52.44	55.66
KRH06646	Soybean	cytosol	39.21	55.41

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100255401	wikigene:100255401	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1
InterPro:BPM_C	InterPro:BTB/POZ_dom	ProteinID:CCB56028	ProteinID:CCB56028.1	UniProt:F6HMP6	EMBL:FN595995
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0008150
GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0042631	GO:GO:0071472
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	EntrezGene:LOC100255401	wikigene:LOC100255401	InterPro:MATH/TRAF_dom
PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF53	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	TIGR:TC65966	InterPro:TRAF-like
UniParc:UPI00015CD06A	ArrayExpress:VIT_08s0056g01670	EnsemblPlantsGene:VIT_08s0056g01670	EnsemblPlants:VIT_08s0056g01670.t01	unigene:Vvi.17663	RefSeq:XP_002277085
RefSeq:XP_002277085.1	RefSeq:XP_019077172.1	:	:	:	:

Description

No Description!

Coordinates

chr8:+:2660986..2692520

Molecular Weight (calculated)

47576.3 Da

IEP (calculated)

5.475

GRAVY (calculated)

-0.235

Length

431 amino acids

Sequence
(BLAST)

001: MSEFLSSNKA SLLSPTSSRS VTETVNGSHK FVIQGYSLAK GMGVGKHIAS ENFTVGGYQW AIYFYPDGKN PEDHSTYVSV FIALASEGTD VRALFELTLV
101: DQSGKGKHKV HSHFDRSLES GPYTLKYRGS MWGYKRFFRR AMLESSDFLK DDCLKINCTV GVVVSAIDCS RLHPIQVPDS DIGAHFGMLL ENEEGSDVIF
201: DVSGEKFHAH KLVLAARSPI FESEFINGPE DDKQEIVVKD MDPKIFKAVL HFIYRDSLIE DEELLTSGSS CMVSESDTIA AKLLAAADKY GLTRLRLMCE
301: ALLCKDISVN SVSKILALAD RYHAMDLKAV CLKFAAENLV AVMRSDGFEY LKANCPLLQS ELLKTVAGCE EEFSGGGKSR SVCAQFSDGD DETNARSVRQ
401: QTWECSNGGE RSRTFWVQLS DGSDEGGRNA R

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.