CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97813
EES05529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	EES05529	AT1G26830.1	15772280
AT3G43700.1	EER97813	AT2G39760.1	15618422
AT5G21010.1	EER97813	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25976	Sorghum	cytosol	27.04	95.87
Zm00001d013094_P001	Maize	cytosol	95.1	95.33
HORVU5Hr1G104190.1	Barley	cytosol	82.05	87.13
TraesCS5A01G429400.2	Wheat	cytosol	85.55	83.98
TraesCS5B01G431400.2	Wheat	cytosol	84.85	83.3
KXG34465	Sorghum	cytosol	81.82	79.59
TraesCS5D01G437400.1	Wheat	cytosol	83.92	78.09
GSMUA_Achr7P27230_001	Banana	cytosol	69.46	75.83
GSMUA_Achr4P14800_001	Banana	cytosol	68.07	74.3
GSMUA_Achr5P08970_001	Banana	cytosol	69.46	74.13
Solyc01g009060.2.1	Tomato	cytosol	69.0	73.09
PGSC0003DMT400058456	Potato	cytosol	68.53	72.59
VIT_06s0009g01030.t01	Wine grape	cytosol	70.86	71.87
KRH73429	Soybean	cytosol, plastid	65.5	70.96
PGSC0003DMT400070468	Potato	cytosol	67.37	70.83
KRH14738	Soybean	cytosol	65.27	70.71
Solyc11g072070.1.1	Tomato	cytosol	66.67	70.1
VIT_08s0056g01670.t01	Wine grape	plastid	68.3	67.98
CDX88828	Canola	plastid	62.94	65.85
Bra006591.1-P	Field mustard	plastid	62.94	65.85
KRG94896	Soybean	mitochondrion	66.2	65.74
CDX70957	Canola	plastid	62.47	65.37
KRH06640	Soybean	mitochondrion, plastid	65.97	65.21
AT5G21010.1	Thale cress	cytosol	62.0	64.88
AT3G43700.1	Thale cress	plastid	61.31	63.37
Bra036437.1-P	Field mustard	plastid	65.73	63.23
CDY29955	Canola	plastid	65.27	62.36
Bra020142.1-P	Field mustard	plastid	59.91	61.93
KRG88616	Soybean	cytosol	33.57	61.54
CDY09093	Canola	cytosol, plastid	52.45	61.31
KRG88614	Soybean	mitochondrion	44.52	61.22
KRG94057	Soybean	mitochondrion	26.11	61.2
AT3G03740.1	Thale cress	cytosol	66.2	61.08
KRG94056	Soybean	cytosol	10.96	59.49
KRG94050	Soybean	mitochondrion	52.21	59.26
KRG88615	Soybean	mitochondrion	51.98	58.99
KRG94069	Soybean	cytosol	48.95	58.82
CDY71585	Canola	cytosol	27.51	58.42
KRG94047	Soybean	cytosol, mitochondrion, plastid	39.39	58.08
KRG94064	Soybean	mitochondrion	51.05	57.94
KRH06645	Soybean	cytosol	53.15	57.58
CDY16586	Canola	cytosol	23.08	56.9
KRG94053	Soybean	cytosol	24.01	55.08
KRG94052	Soybean	cytosol	24.01	55.08
KRG94058	Soybean	mitochondrion	48.02	54.79
EER97813	Sorghum	plastid	50.35	53.73
EER99824	Sorghum	plastid	52.45	52.82
CDY67137	Canola	endoplasmic reticulum	43.36	52.25
KRH06646	Soybean	cytosol	33.57	47.21
EES14728	Sorghum	cytosol	34.27	41.53
OQU80115	Sorghum	cytosol	31.93	39.14
KXG24742	Sorghum	mitochondrion	32.63	38.78
KXG24752	Sorghum	cytosol	14.69	38.18
EES14743	Sorghum	cytosol, mitochondrion, plastid	31.7	37.78
OQU82373	Sorghum	cytosol, plastid	29.37	37.17
KXG24755	Sorghum	mitochondrion	32.4	36.97
EES14736	Sorghum	cytosol	30.54	36.9
EES13596	Sorghum	mitochondrion	29.6	36.6
KXG24756	Sorghum	cytosol	29.84	36.06
EER99574	Sorghum	cytosol	30.54	35.89
KXG27151	Sorghum	plastid	32.17	35.75
EES08963	Sorghum	cytosol	31.47	35.53
OQU82372	Sorghum	plastid	27.97	35.19
OQU80150	Sorghum	plastid	28.44	34.96
EER87831	Sorghum	cytosol	28.67	34.75
EES14737	Sorghum	cytosol	28.67	34.65
OQU80118	Sorghum	cytosol	9.79	34.43
KXG24747	Sorghum	cytosol	28.67	34.36
EES11459	Sorghum	plastid	30.3	34.12
OQU80119	Sorghum	cytosol	30.07	34.04
EES13585	Sorghum	cytosol, plastid	28.44	31.61
KXG24406	Sorghum	cytosol	30.54	31.19
EES11455	Sorghum	cytosol	22.14	29.32
KXG24338	Sorghum	cytosol	24.94	22.57

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:8061186	InterPro:BPM_C
InterPro:BTB/POZ_dom	UniProt:C5WY31	EnsemblPlants:EER90755	ProteinID:EER90755	ProteinID:EER90755.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom
PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	EnsemblPlantsGene:SORBI_3001G061700	SUPFAM:SSF49599	SUPFAM:SSF54695	unigene:Sbi.6210
InterPro:TRAF-like	UniParc:UPI0001A82183	RefSeq:XP_002463757.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:4568595..4572148

Molecular Weight (calculated)

47253.4 Da

IEP (calculated)

5.565

GRAVY (calculated)

-0.315

Length

429 amino acids

Sequence
(BLAST)

001: MEDEDAGPGG GGEASPPHHA AAASGDRARD MAASPTRSRS VTQTVNGSHR FVIQGYSLAK GMGVGKHIAS ETFTVGGYQW AIYFYPDGKN PEDNSNYVSV
101: FIALASDGTD VRALFELTLL DQSGKGKHKV HSHFDRSLES GPYTLKYRGS MWGYKRFFRR NALELSDFLK DDCLKINCTV GVVVSTMDYS RPHSIEVPES
201: DIGYHFGTLL DTQEGVDVIF SVAGEKFHAH KLVLAARSPF FRSEFFDHES GEEKNETDTK DEIKEIVIDD MDPVVFKAVL HFIYRDNLVD DDELSASSSD
301: CSIFDSLAGK LMAAADKYEL PRLRLLCESY LCKHISVNSV ATTLALADRH HAVELKSVCL KFAAENLSAV IRTEGFDYLK DNCISLQSEI LRTVAGCEEP
401: CSSGVKSQSV WAQLSDGGDT SGRRVRPRV

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.