CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plasma membrane 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80150	Sorghum	plastid	47.41	52.44
EES14743	Sorghum	cytosol, mitochondrion, plastid	47.41	50.83
EES13596	Sorghum	mitochondrion	45.08	50.14
KXG24752	Sorghum	cytosol	20.21	47.27
OQU80115	Sorghum	cytosol	41.71	46.0
EES14737	Sorghum	cytosol	41.45	45.07
KXG24742	Sorghum	mitochondrion	41.19	44.04
EER87831	Sorghum	cytosol	39.64	43.22
EES14728	Sorghum	cytosol	39.38	42.94
EES14736	Sorghum	cytosol	38.86	42.25
OQU80118	Sorghum	cytosol	13.21	41.8
KXG24755	Sorghum	mitochondrion	40.16	41.22
EER99574	Sorghum	cytosol	38.86	41.1
OQU80119	Sorghum	cytosol	40.16	40.9
EES08963	Sorghum	cytosol	40.16	40.79
KXG24756	Sorghum	cytosol	37.05	40.28
KXG24747	Sorghum	cytosol	36.53	39.39
KXG27151	Sorghum	plastid	34.72	34.72
OQU82373	Sorghum	cytosol, plastid	29.79	33.92
KXG24406	Sorghum	cytosol	36.53	33.57
OQU82372	Sorghum	plastid	28.76	32.55
EES11455	Sorghum	cytosol	27.2	32.41
EES11459	Sorghum	plastid	30.83	31.23
EER99824	Sorghum	plastid	33.68	30.52
EER97813	Sorghum	plastid	30.57	29.35
EER90755	Sorghum	cytosol	31.61	28.44
KXG34465	Sorghum	cytosol	31.87	27.89
KXG25976	Sorghum	cytosol	8.55	27.27
KXG24338	Sorghum	cytosol	32.38	26.37

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:8073235	InterPro:BPM_C
InterPro:BTB/POZ_dom	UniProt:C5YJF7	EnsemblPlants:EES13585	ProteinID:EES13585	ProteinID:EES13585.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom
PFAM:PF00651	PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF211
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	EnsemblPlantsGene:SORBI_3007G087200	SUPFAM:SSF49599	SUPFAM:SSF54695	unigene:Sbi.5366
InterPro:TRAF-like	UniParc:UPI0001A87C17	RefSeq:XP_002444090.1	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:11795068..11796657

Molecular Weight (calculated)

43333.0 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.184

Length

386 amino acids

Sequence
(BLAST)

001: MASESPRTWS ASVSAVETAH GTHSFRIARY SLHKKASVNK CFYSAVFTVG GHDWRIRYCP DGAEPPMTMI VNSSYDSDSV FLELTAGDGG KLVEVRATYG
101: FRMVNPVTGI SYSRNDSGLQ VFHSNRRSHG FTMFVRKVEQ HKYLQDDCLV IECDVMVVKE LQVKEATCVT SGFDIQVPPS DLSHDLRKLL ESEEEADVKF
201: KVKEEVFHAH KIVLAMRSPV FKAELYGPMR DKGMVESITI QGMDPAVFKG LLHFIYTDRF PRMDDLVEDE EQQDMVKHLL VAADRYGMER LKSMCEGILC
301: SNLDVESVAY TMALAGQHHC SKLKSACIEF IINSNLMDVV VASQGYEHLK RACPDVAVEL WENSAKSPIT RSSCIGGQLM NYPILN

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.