CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80150	Sorghum	plastid	67.15	66.76
EES14743	Sorghum	cytosol, mitochondrion, plastid	53.6	51.67
KXG24752	Sorghum	cytosol	21.9	46.06
OQU80118	Sorghum	cytosol	16.14	45.9
OQU80115	Sorghum	cytosol	45.53	45.14
EES13585	Sorghum	cytosol, plastid	50.14	45.08
EER87831	Sorghum	cytosol	44.96	44.07
KXG24756	Sorghum	cytosol	44.38	43.38
EES14736	Sorghum	cytosol	43.8	42.82
EER99574	Sorghum	cytosol	44.96	42.74
KXG24742	Sorghum	mitochondrion	44.09	42.38
EES14728	Sorghum	cytosol	43.23	42.37
EES08963	Sorghum	cytosol	46.11	42.11
OQU80119	Sorghum	cytosol	45.82	41.95
KXG24755	Sorghum	mitochondrion	44.38	40.96
EES14737	Sorghum	cytosol	41.21	40.28
KXG24747	Sorghum	cytosol	41.21	39.94
KXG24406	Sorghum	cytosol	42.07	34.76
OQU82372	Sorghum	plastid	33.72	34.31
OQU82373	Sorghum	cytosol, plastid	33.14	33.92
KXG27151	Sorghum	plastid	37.18	33.42
EER99824	Sorghum	plastid	40.63	33.1
EES11455	Sorghum	cytosol	30.84	33.02
EER97813	Sorghum	plastid	37.18	32.09
KXG25976	Sorghum	cytosol	10.95	31.41
KXG34465	Sorghum	cytosol	38.04	29.93
EER90755	Sorghum	cytosol	36.6	29.6
EES11459	Sorghum	plastid	32.28	29.4
KXG24338	Sorghum	cytosol	36.31	26.58

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	EntrezGene:8073246	InterPro:BPM_C
InterPro:BTB/POZ_dom	UniProt:C5YJH7	EnsemblPlants:EES13596	ProteinID:EES13596	ProteinID:EES13596.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom
PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF211	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	EnsemblPlantsGene:SORBI_3007G088700	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like
UniParc:UPI0001A87C22	RefSeq:XP_002444101.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:12343790..12345119

Molecular Weight (calculated)

38582.6 Da

IEP (calculated)

6.750

GRAVY (calculated)

-0.143

Length

347 amino acids

Sequence
(BLAST)

001: MSAALKRPGT RTASMYVAAE TARVTHSFKI VGNGLHKNFG VGRCIRSAPF SVGGHNWCIL YYPDGRTEDC KDYVSIFLEL MSENTEATAL REFRLVNQTT
101: GISTSISCTC QAVYNAENAA RGSRKFMKKG DLESLGYLKD GCLEIECDLT VIKGDDIDLP PSDLQDNLGK LLESEEGVDV TFKVKDELFR AHKIVLKMRS
201: PVFEAELPRD KRKRIIIVED MEPPVFKALL RFIYTDSLPS MGDLDGDEND EMVRHLLVAA NRYGLVRMKL MCESILCNRL AVQNVAATLA VADQCRCYKL
301: KDACIQFISS SNRLDDVAAS QGFEDLKKAC PALIAAIYEK AAVPHKI

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.