Factsheet for PGSC0003DMT400070468

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765
PGSC0003DMT400069942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT3G43700.1	PGSC0003DMT400069942	AT2G39760.1	15618422
AT5G21010.1	PGSC0003DMT400069942	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072070.1.1	Tomato	cytosol	97.3	97.3
KXG25976	Sorghum	cytosol	26.47	89.26
PGSC0003DMT400058456	Potato	cytosol	83.09	83.7
GSMUA_Achr7P27230_001	Banana	cytosol	71.57	74.3
VIT_06s0009g01030.t01	Wine grape	cytosol	76.96	74.23
GSMUA_Achr5P08970_001	Banana	cytosol	71.81	72.89
KRH73429	Soybean	cytosol, plastid	69.36	71.46
HORVU5Hr1G104190.1	Barley	cytosol	70.59	71.29
KRH14738	Soybean	cytosol	69.12	71.21
GSMUA_Achr4P14800_001	Banana	cytosol	67.89	70.48
TraesCS2D01G246900.1	Wheat	cytosol, plastid	73.28	70.19
TraesCS2B01G262200.1	Wheat	cytosol	73.28	70.19
TraesCS2A01G237800.1	Wheat	cytosol	73.04	69.95
Os07t0167200-01	Rice	cytosol	72.06	69.34
Zm00001d034400_P003	Maize	cytosol	71.08	67.76
Zm00001d013094_P001	Maize	cytosol	71.08	67.76
EER90755	Sorghum	cytosol	70.83	67.37
Zm00001d018887_P002	Maize	cytosol	71.32	67.36
KXG34465	Sorghum	cytosol	71.81	66.44
TraesCS5B01G431400.2	Wheat	cytosol	71.08	66.36
TraesCS5A01G429400.2	Wheat	cytosol	71.08	66.36
AT5G21010.1	Thale cress	cytosol	66.18	65.85
CDX70957	Canola	plastid	65.69	65.37
HORVU2Hr1G055140.1	Barley	cytosol	73.28	65.14
CDX88828	Canola	plastid	65.44	65.12
Bra006591.1-P	Field mustard	plastid	65.44	65.12
AT3G43700.1	Thale cress	plastid	64.71	63.61
TraesCS5D01G437400.1	Wheat	cytosol	71.57	63.34
Bra020142.1-P	Field mustard	plastid	62.75	61.69
CDY09093	Canola	cytosol, plastid	54.9	61.04
CDY71585	Canola	cytosol	29.9	60.4
CDY16586	Canola	cytosol	24.26	56.9
PGSC0003DMT400009802	Potato	plastid	56.62	56.62
PGSC0003DMT400011115	Potato	plastid	56.13	56.27
PGSC0003DMT400069942	Potato	cytosol	54.17	54.17

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:102588086	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083
InterPro:IPR008974	UniProt:M1CM87	InterPro:MATH/TRAF_dom	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG400027397	PGSC:PGSC0003DMG400027397
EnsemblPlants:PGSC0003DMT400070468	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF53	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0002964307
RefSeq:XP_006340346.1	SEG:seg	:	:	:	:

Description

BTB-POZ and MATH domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027397]

Coordinates

chr11:-:43649016..43657971

Molecular Weight (calculated)

44969.2 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.218

Length

408 amino acids

Sequence
(BLAST)

001: MSELPTITHV SDRIAVGELA PPTSSRSVTD TVNGSHRFVI SGYSLAKGMG VGKHIASDTF TVGGHQWAIY FYPDGKNPED NSAYVSVFIA LASEGTDVRA
101: LFELTLIDQS GKGKHKVHSH FDRSLESGPY TLKYRGSMWG YKRFFRRALL ETSDYLKDDC LKINCTVGVV RSTIECSNLH TIQVPDQDMG AHFGMLLENM
201: EASDVIFNVA GEMFHAHKLV LAARSPVFHT EFLCGHEGDA QEIVVNDMEP EVFKAMLHFI YKDALVEEEL EATRTSTTPC ISDTLTAKLL SAADRYDLTR
301: LRRLCESHLC KDISINSVAQ ILALADRYHA AELKSVCLSF SAENLSAVMQ SDGFEYLKEN CPALQSELLK TVAGCEDDSS SGGGKSKSVW AQLSDGGDTN
401: GRRIRQRT

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.