Factsheet for Zm00001d013094_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007888_P002
Zm00001d018043_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	Zm00001d018043_P001	AT1G26830.1	15772280
AT3G43700.1	Zm00001d007888_P002	AT2G39760.1	15618422
AT5G21010.1	Zm00001d007888_P002	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90755	Sorghum	cytosol	95.33	95.1
Zm00001d034400_P003	Maize	cytosol	93.93	93.93
HORVU5Hr1G104190.1	Barley	cytosol	81.54	86.39
TraesCS5A01G429400.2	Wheat	cytosol	84.35	82.61
TraesCS5B01G431400.2	Wheat	cytosol	83.64	81.92
Zm00001d018887_P002	Maize	cytosol	78.74	78.01
TraesCS5D01G437400.1	Wheat	cytosol	82.94	77.01
GSMUA_Achr7P27230_001	Banana	cytosol	69.86	76.08
GSMUA_Achr4P14800_001	Banana	cytosol	69.39	75.57
GSMUA_Achr5P08970_001	Banana	cytosol	69.39	73.88
Solyc01g009060.2.1	Tomato	cytosol	69.63	73.58
PGSC0003DMT400058456	Potato	cytosol	69.16	73.09
VIT_06s0009g01030.t01	Wine grape	cytosol	71.96	72.81
KRH73429	Soybean	cytosol, plastid	66.12	71.46
PGSC0003DMT400070468	Potato	cytosol	67.76	71.08
KRH14738	Soybean	cytosol	65.65	70.96
Solyc11g072070.1.1	Tomato	cytosol	67.52	70.83
VIT_08s0056g01670.t01	Wine grape	plastid	69.16	68.68
CDX88828	Canola	plastid	63.78	66.59
Bra006591.1-P	Field mustard	plastid	63.78	66.59
CDX70957	Canola	plastid	63.32	66.1
KRG94896	Soybean	mitochondrion	66.12	65.51
AT5G21010.1	Thale cress	cytosol	62.62	65.37
KRH06640	Soybean	mitochondrion, plastid	65.89	64.98
AT3G43700.1	Thale cress	plastid	62.15	64.1
Bra036437.1-P	Field mustard	plastid	66.12	63.45
CDY29955	Canola	plastid	65.65	62.58
Bra020142.1-P	Field mustard	plastid	60.51	62.41
KRG88614	Soybean	mitochondrion	45.09	61.86
CDY09093	Canola	cytosol, plastid	53.04	61.85
KRG94057	Soybean	mitochondrion	26.4	61.75
KRG88616	Soybean	cytosol	33.64	61.54
AT3G03740.1	Thale cress	cytosol	66.36	61.08
KRG94056	Soybean	cytosol	11.21	60.76
KRG94050	Soybean	mitochondrion	52.57	59.52
KRG88615	Soybean	mitochondrion	52.34	59.26
KRG94069	Soybean	cytosol	49.3	59.1
CDY71585	Canola	cytosol	27.8	58.91
KRG94047	Soybean	cytosol, mitochondrion, plastid	39.72	58.42
KRG94064	Soybean	mitochondrion	51.4	58.2
KRH06645	Soybean	cytosol	53.5	57.83
CDY16586	Canola	cytosol	23.36	57.47
KRG94053	Soybean	cytosol	24.3	55.62
KRG94052	Soybean	cytosol	24.3	55.62
KRG94058	Soybean	mitochondrion	48.36	55.05
Zm00001d022366_P001	Maize	plastid	52.8	53.55
Zm00001d007068_P001	Maize	plastid	52.57	52.82
CDY67137	Canola	endoplasmic reticulum	43.69	52.53
KRH06646	Soybean	cytosol	33.88	47.54
Zm00001d007888_P002	Maize	plastid	46.96	46.74
Zm00001d024349_P001	Maize	cytosol	27.57	32.87

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100272712	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	ProteinID:AQK62421.1
UniProt:B4FQ32	InterPro:BPM_C	EMBL:BT039220	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	EMBL:KJ727919	InterPro:MATH/TRAF_dom
PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI00017B798F
EnsemblPlantsGene:Zm00001d013094	EnsemblPlants:Zm00001d013094_P001	EnsemblPlants:Zm00001d013094_T001	SEG:seg	:	:

Description

math-btb17BTB/POZ and MATH domain-containing protein 4

Coordinates

chr5:+:4676461..4680171

Molecular Weight (calculated)

47238.4 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.315

Length

428 amino acids

Sequence
(BLAST)

001: MEDEDTGPGD GGEASPPHHV AASSDRARDM VASPTSSRSV TQTVNGSHHF VIQGYSLAKG MGVGKHIASE TFTVGGYQWA IYFYPDGKNP EDNSTYVSVF
101: IALASDGTDV RALFELTLLD QSGKGKHKVH SHFDRSLESG PYTLKYRGSM WGYKRFFRRT ALEQSDFLKD DCLKINCTVG VVVSTMDYSR PHSIEVPESD
201: IGFHFGTLLD TQEGVDVIFS VAGEKFHAHK LVLAARSPFF RSEFFDHELG EEKNGTDTGD EIKEIVIDDM DPVVFKAVLH FIYRDNLVND DELSASSSDC
301: SIFDRLSGKL MAAADKYELP RLRLLCESYL CKHISVNSVA TTLALADRHH AMELKSVCLK FAAENLSAVI RTEGFDYLKD NCPSLQSEIL RTVAGCEEPC
401: SSGLKSQSVW AQLSDGGDTS GRRVRPRV

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.