Factsheet for Solyc01g080250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06190.1	Solyc01g010820.2.1	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011115	Potato	plastid	98.53	98.53
VIT_05s0020g02520.t01	Wine grape	plastid	72.97	72.79
Solyc09g072980.2.1	Tomato	cytosol	71.74	70.87
AT3G06190.1	Thale cress	cytosol	67.81	67.98
CDY05245	Canola	cytosol	66.09	67.93
GSMUA_Achr6P16160_001	Banana	plastid	69.53	67.87
CDY24708	Canola	cytosol	67.08	67.74
Bra040233.1-P	Field mustard	cytosol	64.37	67.35
HORVU2Hr1G023850.1	Barley	cytosol, plastid	64.86	67.35
Bra001186.1-P	Field mustard	cytosol	66.58	67.25
CDY58342	Canola	cytosol	66.58	67.25
Bra020764.1-P	Field mustard	cytosol	63.15	66.75
CDY08064	Canola	cytosol	66.58	66.58
GSMUA_Achr6P23740_001	Banana	plastid	67.81	66.35
Bra006489.1-P	Field mustard	cytosol	64.62	65.26
CDY66705	Canola	cytosol	64.62	65.26
Zm00001d022366_P001	Maize	plastid	66.34	63.98
Zm00001d007068_P001	Maize	plastid	66.34	63.38
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	66.09	63.29
EER99824	Sorghum	plastid	66.09	63.15
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	65.85	63.06
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	65.85	63.06
Bra002200.1-P	Field mustard	cytosol	61.92	63.0
Os07t0655300-01	Rice	plastid	66.09	61.98
CDY18844	Canola	cytosol	64.37	61.07
CDX70860	Canola	cytosol	64.86	60.0
AT5G19000.2	Thale cress	plastid	64.86	59.73
CDX92567	Canola	cytosol	62.65	58.09
CDY02591	Canola	cytosol	56.76	57.75
CDY13941	Canola	cytosol	61.43	56.95
Solyc01g009060.2.1	Tomato	cytosol	56.27	56.54
Solyc11g072070.1.1	Tomato	cytosol	55.77	55.64
Solyc05g052960.2.1	Tomato	cytosol	54.79	54.66

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
UniProt:K4AXR9	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411
PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695
EnsemblPlantsGene:Solyc01g080250.2	EnsemblPlants:Solyc01g080250.2.1	InterPro:TRAF-like	UniParc:UPI0002762336	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:79472260..79481300

Molecular Weight (calculated)

45199.1 Da

IEP (calculated)

6.454

GRAVY (calculated)

-0.116

Length

407 amino acids

Sequence
(BLAST)

001: MGTFRVPSEP SKPLNSSSSQ PTTTTSTSRI DTINGSHEFK VDGYALSKGM GIGKYVTSEI FTVGGHSWAV YFYPDGKSSE DNGTYVSLFI ALASDATDVR
101: ALFELSLMDQ SGNERHKVHT HFGRVLETGP YTLKYRGSMW GYKRFFRRTL LETSDYLKDD CLLIQCTVGV VRSYNETPKT FSLPVPPSDI GLHFGQLLES
201: GEGADIKFEV EGEVFAAHKL VLAARSPVLR AQLFGPLKEE NIQSIRVEEI QAPVFKALLH FIYWDSLPDL QELVGLDTKW AVALMAQHLL AAADQYGLER
301: LRALCEAKLC EDVTINTVAT TLALADQHHC VQLKSVCLKF IALPENLKAV MQSEGFDHLK ESCPSVITEL LKYVAGMNEH AIISYVHGGH ILDGTDVNGR
401: RVKQRIY

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.