CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93520	Soybean	cytosol	97.54	97.54
PGSC0003DMT400003338	Potato	cytosol	83.63	83.63
Solyc02g087900.2.1	Tomato	cytosol	83.36	83.36
GSMUA_Achr7P18000_001	Banana	cytosol	80.49	83.33
GSMUA_AchrUn_...	Banana	cytosol	80.49	83.33
GSMUA_Achr8P16990_001	Banana	cytosol	80.08	82.91
EES05529	Sorghum	cytosol	81.17	80.84
KRH45896	Soybean	cytosol	80.63	80.74
Os02t0746000-01	Rice	cytosol	81.04	80.71
Zm00001d018043_P001	Maize	cytosol	80.76	80.43
VIT_14s0108g00490.t01	Wine grape	cytosol	85.95	80.36
KRG99095	Soybean	cytosol	80.08	80.19
GSMUA_AchrUn_...	Banana	cytosol	64.94	80.0
TraesCS6B01G335200.1	Wheat	cytosol	80.22	79.89
TraesCS6D01G285800.1	Wheat	cytosol	80.08	79.76
TraesCS6A01G306600.1	Wheat	cytosol	79.95	79.62
HORVU6Hr1G075720.2	Barley	cytosol	79.95	78.55
KRH70713	Soybean	cytosol	71.9	72.49
KRH21073	Soybean	cytosol	18.69	47.9
KRH42547	Soybean	cytosol	41.06	39.14
KRH58640	Soybean	cytosol	41.2	38.97
KRH11182	Soybean	cytosol, plastid	40.38	37.56
KRG96405	Soybean	cytosol	34.52	34.28
KRH12127	Soybean	cytosol	34.79	34.27
KRH37131	Soybean	cytosol, nucleus	34.79	34.27
KRH02236	Soybean	cytosol, nucleus	34.65	34.14
KRH68142	Soybean	cytosol	34.38	34.01
KRH50876	Soybean	endoplasmic reticulum	34.38	33.87
KRH15695	Soybean	cytosol	15.42	30.96
KRH21072	Soybean	plastid	19.65	29.81

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100798198	MapMan:19.2.2.8.2.1	EMBL:ACUP02008076
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	EnsemblPlantsGene:GLYMA_13G063600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	UniProt:I1LWJ8	InterPro:IPR016158	InterPro:IPR036388	EnsemblPlants:KRH18483
ProteinID:KRH18483	ProteinID:KRH18483.1	ProteinID:KRH18484.1	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniParc:UPI000233BC51	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:16215045..16220357

Molecular Weight (calculated)

85488.2 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.495

Length

733 amino acids

Sequence
(BLAST)

001: MSTQKKRPYH IEAFKHRAVG DPKYAEKTWK VLEHAIHEIY NHNASGLSFE ELYRNAYNMV LQKFGEKLYT GLVTTMTSHL KEISQSIESA QGEIFLEEIN
101: RKWVDHNKAL QMIRDILMYM DRTFIPSNHK TPVHELGLNL WRDVVIHSSK TQARLLDTLL ELVLRERNGE VINRGLMRNI IKMLMDLGLP VYQQDFEKHF
201: LDVSANFYCR ESQKFIESCD CGDYLKKAER RLNEEMERVS HYLDPRSESK ITNVVEKEMI ESHMHTLVHM ENSGLVSMLV DDKYEDLQRM HNLFRRVPDG
301: LTIVKDVMTS FVRDTGKQLV MDPERLRDPV DFVQRLLDLK DKYDRVITMS FNNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRRG LKGVGEEDVE
401: ILLDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTISDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SHDTMQGFYA ILGTEMGDSP SLSVQVLTTG
501: SWPTQPSPPC NLPAEILGVC DKFRTYYLGT HNGRRLSWQT NMGTADLKAT FGKGQKHELN VSTYQMCVLM LFNSAERLTC KEIEQATAIP MSDLRRCLQS
601: LACVKGKNVL RKEPMSKDIA EDDAFFFNDK FTSKFFKVKI GTVVAQRESE PENLETRQRV EEDRKPQIEA AIVRIMKSRR TLDHNNIVAE VTKQLQSRFL
701: PNPVVIKKRI ESLIEREFLE RDKVDRKLYR YLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.