CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRH01878
KRH10462
KRH12069
KRH14801
KRH16085
KRH17028
KRH23810
KRH25071
KRH33363
KRH37088
KRH39972
KRH42820
KRH43086
KRH43983
KRH51281
KRH52095
KRH52554
KRH52586
KRH57651
KRH59212
KRH59213
KRH61410
KRH61892
KRH61926
KRH72668
KRH72670
KRH73341
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	KRH52095	AT1G19750.1	20622147
AT5G46210.1	KRH61410	AT1G19750.1	20622147
AT5G46210.1	KRH52586	AT1G71230.1	16844902
AT5G46210.1	KRH61926	AT1G71230.1	16844902
AT5G46210.1	KRH01878	AT2G02560.1	16844902
AT5G46210.1	KRH51281	AT2G02560.1	16844902
AT5G46210.1	KRH75237	AT2G02560.1	16844902
AT5G46210.1	KRH14801	AT2G32950.1	16844902
AT5G46210.1	KRH73341	AT2G32950.1	16844902
AT5G46210.1	KRH42820	AT3G13550.1	16844902
AT5G46210.1	KRH25071	AT4G05420.1	16792691
AT5G46210.1	KRH43086	AT4G05420.1	16792691
AT5G46210.1	KRH59212	AT4G05420.1	16792691
AT5G46210.1	KRH59213	AT4G05420.1	16792691
AT5G46210.1	KRH25071	AT4G05420.1	16844902
AT5G46210.1	KRH43086	AT4G05420.1	16844902
AT5G46210.1	KRH59212	AT4G05420.1	16844902
AT5G46210.1	KRH59213	AT4G05420.1	16844902
AT5G46210.1	KRH25071	AT4G05420.1	18223036
AT5G46210.1	KRH43086	AT4G05420.1	18223036
AT5G46210.1	KRH59212	AT4G05420.1	18223036
AT5G46210.1	KRH59213	AT4G05420.1	18223036
AT5G46210.1	KRH25071	AT4G05420.1	18551167
AT5G46210.1	KRH43086	AT4G05420.1	18551167
AT5G46210.1	KRH59212	AT4G05420.1	18551167
AT5G46210.1	KRH59213	AT4G05420.1	18551167
AT5G46210.1	KRH10462	AT4G14110.1	16844902
AT5G46210.1	KRH33363	AT4G14110.1	16844902
AT5G46210.1	KRH43983	AT4G14110.1	16844902
AT5G46210.1	KRH12069	AT4G15900.1	18223036
AT5G46210.1	KRH37088	AT4G15900.1	18223036
AT5G46210.1	KRH25071	AT4G21100.1	16792691
AT5G46210.1	KRH43086	AT4G21100.1	16792691
AT5G46210.1	KRH59212	AT4G21100.1	16792691
AT5G46210.1	KRH59213	AT4G21100.1	16792691
AT5G46210.1	KRH16085	AT4G31160.1	18552200
AT5G46210.1	KRH52554	AT4G31160.1	18552200
AT5G46210.1	KRH61892	AT4G31160.1	18552200
AT5G46210.1	KRG94317	AT5G14250.1	16844902
AT5G46210.1	KRH57651	AT5G14250.1	16844902
AT5G46210.1	KRH23810	AT5G42970.1	16844902
AT5G46210.1	KRH39972	AT5G42970.1	16844902
AT5G46210.1	KRH17028	AT5G58760.1	18551167
AT5G46210.1	KRH72668	AT5G58760.1	18551167
AT5G46210.1	KRH72670	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	35.5	95.45
KRH58640	Soybean	cytosol	95.58	94.84
KRH11182	Soybean	cytosol, plastid	89.08	86.93
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	85.7	83.95
VIT_10s0003g03710.t01	Wine grape	cytosol	87.39	83.79
CDY33461	Canola	cytosol	81.27	82.13
Bra025031.1-P	Field mustard	cytosol	81.01	81.97
TraesCS5A01G425300.1	Wheat	cytosol	75.03	81.15
KRH21072	Soybean	plastid	50.85	80.95
CDX77644	Canola	cytosol	80.62	80.83
CDY43957	Canola	cytosol	81.27	80.54
Bra022023.1-P	Field mustard	plastid	81.66	80.0
CDX87735	Canola	cytosol	81.01	79.87
CDY35152	Canola	plastid	81.14	79.39
Bra017569.1-P	Field mustard	plastid	81.01	79.26
CDY03235	Canola	plastid	81.14	78.99
AT5G46210.1	Thale cress	cytosol	81.01	78.66
Solyc02g070460.2.1	Tomato	plastid	81.79	78.43
GSMUA_Achr4P22850_001	Banana	cytosol	81.79	78.33
TraesCS5B01G427400.1	Wheat	cytosol	78.15	74.84
EER93338	Sorghum	plastid	79.97	73.74
Zm00001d034361_P001	Maize	cytosol, plastid	79.71	73.68
TraesCS5D01G433700.3	Wheat	cytosol, plastid	78.67	72.89
HORVU5Hr1G103580.2	Barley	plastid	78.8	72.75
GSMUA_Achr7P01270_001	Banana	cytosol	81.53	71.66
Zm00001d013116_P002	Maize	plastid	79.45	71.05
KRH45896	Soybean	cytosol	39.66	41.67
KRG99095	Soybean	cytosol	39.4	41.39
KRG93520	Soybean	cytosol	39.27	41.2
KRH18483	Soybean	cytosol	39.14	41.06
KRH70713	Soybean	cytosol	36.02	38.1
KRH37131	Soybean	cytosol, nucleus	31.08	32.12
KRH50876	Soybean	endoplasmic reticulum	31.08	32.12
KRH12127	Soybean	cytosol	31.08	32.12
KRH02236	Soybean	cytosol, nucleus	31.08	32.12
KRG96405	Soybean	cytosol	29.78	31.03
KRH68142	Soybean	cytosol	29.78	30.9
KRH15695	Soybean	cytosol	12.87	27.12

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100797895	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1
EMBL:ACUP02004811	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sf	EnsemblPlantsGene:GLYMA_08G096100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	GO:GO:0080008	InterPro:IPR016158
InterPro:IPR036388	UniProt:K7L5S0	EnsemblPlants:KRH42547	ProteinID:KRH42547	ProteinID:KRH42547.1	PFAM:PF00888
PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27	SMART:SM00182
SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000295A5A8	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:7332965..7343120

Molecular Weight (calculated)

88186.8 Da

IEP (calculated)

7.755

GRAVY (calculated)

-0.339

Length

769 amino acids

Sequence
(BLAST)

001: MSNTKLSPPM KKAKSIDSKN AAASASDDPN APALIAANLS RKKATPPHPP KKFLIRFHKG VPTLPPNFEE ETWAKLKSAI GAIFMKQPVS CDLENLYQAV
101: NDLCLYKMGG NLYQRITKEC EEHISVALQS LVGQSPDLIV FLSLVERCWQ DLCDQLLMIR GIALFLDRTY VKQTTNVRSL WDMGLQLFSK HLSLSSEVEH
201: KTVTGLLRMI ESERSGESVD RTLLNHLLKM FTALGIYVET FEKPFLECTS EFYAAEVMKY MQQSDAPDYL KHVETRLQEE HERCLLYLDA STRKPLIGIA
301: EKQLLERHIP AILDKGFIML MDGNRIEDLQ RMHSLFSRVN ALESLKQALS SYIRRTGQGI VMDEEKDKDM VSSLLEFKAS LDTIWEESFF KNEPFSNSIK
401: DAFEYLINLR QNRPAELIAK FLDEKLRAGN KGTSEEELEA TLDKVLVLFR FIQGKDVFEA FYKKDLAKRL LLGKSASIDG EKSMISKLKT ECGSQFTNKL
501: EGMFKDIELS KEINESFKQS SQARSKLASG IEMSVHVLTT GYWPTYPPID VRLPHELNVY QDIFKEFYLS KYSGRHLMWQ NSLGHCVLKA EFPKGRKELA
601: VSLFQTVVLM LFNDAEKLSL QDIKDATGIE DKELRRILQS LACGKVRVLQ KMPKGRDVED DDSFVFNDGF TAPLYRIKVN AIQLKETVEE NTSTTERVFQ
701: DRQYQIDAAL VRIMKTRKVL SHTLLITELF QQLKFPIKPA DLKKRIESLI DREYLERDKS NPQIYNYLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.