Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14801 | Soybean | nucleus | 96.41 | 95.56 |
| AT2G32950.1 | Thale cress | nucleus | 77.58 | 76.89 |
| Bra005541.1-P | Field mustard | nucleus | 76.08 | 76.08 |
| CDY52540 | Canola | nucleus | 76.98 | 76.07 |
| CDY12145 | Canola | nucleus | 76.53 | 75.74 |
| Solyc12g005950.1.1 | Tomato | nucleus | 75.19 | 74.3 |
| PGSC0003DMT400036075 | Potato | nucleus | 71.75 | 73.51 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 73.84 | 73.08 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 71.3 | 70.56 |
| Os02t0771100-01 | Rice | nucleus | 70.7 | 69.05 |
| Zm00001d052138_P004 | Maize | nucleus | 70.55 | 68.8 |
| Zm00001d018207_P001 | Maize | nucleus | 71.0 | 68.54 |
| KXG31183 | Sorghum | nucleus, plastid | 70.85 | 68.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.02 | 68.08 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 69.36 | 66.96 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 69.36 | 66.38 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 69.06 | 66.0 |
| KRH55271 | Soybean | cytosol | 7.17 | 37.8 |
| KRH25904 | Soybean | mitochondrion | 5.83 | 35.14 |
| KRH26155 | Soybean | cytosol | 31.24 | 26.52 |
| KRH55275 | Soybean | cytosol | 31.24 | 26.0 |
| KRH22086 | Soybean | plastid | 33.78 | 24.94 |
| KRH27246 | Soybean | plastid | 33.78 | 24.92 |
| KRH60015 | Soybean | plasma membrane | 30.94 | 24.67 |
| KRH06512 | Soybean | nucleus | 30.94 | 20.23 |
| KRH41290 | Soybean | nucleus | 31.24 | 20.21 |
| KRH47949 | Soybean | nucleus | 30.79 | 19.9 |
| KRH77627 | Soybean | nucleus | 31.99 | 18.95 |
| KRH27856 | Soybean | nucleus | 31.39 | 18.7 |
Protein Annotations
| EntrezGene:100813745 | MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 |
| EMBL:ACUP02001273 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G267800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1JII2 | InterPro:IPR001680 | InterPro:IPR001841 |
| InterPro:IPR003613 | InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH73341 | ProteinID:KRH73341 |
| ProteinID:KRH73341.1 | PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50089 | PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00184 | SMART:SM00320 |
| SMART:SM00504 | SUPFAM:SSF50978 | SUPFAM:SSF57850 | UniParc:UPI0002336E3B | InterPro:Ubox_domain | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:45217023..45227434
Molecular Weight (calculated)
75075.9 Da
IEP (calculated)
7.799
GRAVY (calculated)
-0.442
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELSAGPLV PAVVKPEPSK GASAAASGGT FPASTSEPDK DFLCPICMQI IKDPFLTACG HSFCYMCIIT HLRNKSDCPC CGDYLTNTNL FPNLLLDKLL
101: KKTSARQISK TASPVEHFRQ VLQKGSDVSI KELDTLLSLL AEKKRKMEQE EAERNMQILL DFLHCLRKQK VDELKEVQTD LHFIKEDINA VEKHRMELYR
201: ARDRYSVKLQ MLDGSGGRKS WHSSMDKNSS GLLSSPLNLR GGLSSGSHTK KNDGKSHISS HGHGIQRRNV ITGSDSQYIN QSGLALVRKK RVHTQFNDLQ
301: ECYLQKRRHA ADRSHSQQER DISLISREGY TAGLEDFQSV LTTFTRYSRL RVIAELRHGD IFHSANIVSS IEFDRDDDLF ATAGVSRRIK VFDFSAVVNE
401: PTDAHCPVVE MSTRSKLSCL SWNKFAKNQI ASSDYEGIVT VWDVTTRKSL MEYEEHEKRA WSVDFSRTDP SMLVSGSDDC KVKIWCTNQE ASVLNIDMKA
501: NICCVKYNPG SGNYIAVGSA DHHIHYYDLR NISRPVHVFS GHRKAVSYVK FLSNDELASA STDSTLRLWD VKENLPVRTF KGHANEKNFV GLTVSSEYIA
601: CGSETNEVFV YHKEISRPLT SHRFGSPDMD DAEDEAGSYF ISAVCWKSDR PTILTANSQG TIKVLVLAA
101: KKTSARQISK TASPVEHFRQ VLQKGSDVSI KELDTLLSLL AEKKRKMEQE EAERNMQILL DFLHCLRKQK VDELKEVQTD LHFIKEDINA VEKHRMELYR
201: ARDRYSVKLQ MLDGSGGRKS WHSSMDKNSS GLLSSPLNLR GGLSSGSHTK KNDGKSHISS HGHGIQRRNV ITGSDSQYIN QSGLALVRKK RVHTQFNDLQ
301: ECYLQKRRHA ADRSHSQQER DISLISREGY TAGLEDFQSV LTTFTRYSRL RVIAELRHGD IFHSANIVSS IEFDRDDDLF ATAGVSRRIK VFDFSAVVNE
401: PTDAHCPVVE MSTRSKLSCL SWNKFAKNQI ASSDYEGIVT VWDVTTRKSL MEYEEHEKRA WSVDFSRTDP SMLVSGSDDC KVKIWCTNQE ASVLNIDMKA
501: NICCVKYNPG SGNYIAVGSA DHHIHYYDLR NISRPVHVFS GHRKAVSYVK FLSNDELASA STDSTLRLWD VKENLPVRTF KGHANEKNFV GLTVSSEYIA
601: CGSETNEVFV YHKEISRPLT SHRFGSPDMD DAEDEAGSYF ISAVCWKSDR PTILTANSQG TIKVLVLAA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.