CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92422
KRH11936
KRH13218
KRH14801
KRH22086
KRH24463
KRH26155
KRH27246
KRH29448
KRH34384
KRH36969
KRH51523
KRH55271
KRH55275
KRH60839
KRH69122
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04400.1	KRG92422	AT1G04400.1	15805487
AT1G04400.1	KRH13218	AT1G04400.1	15805487
AT1G04400.1	KRH34384	AT1G04400.1	15805487
AT1G04400.1	KRH69122	AT1G04400.1	15805487
AT1G04400.1	KRH22086	AT1G53090.1	22739826
AT1G04400.1	KRH26155	AT1G53090.1	22739826
AT1G04400.1	KRH27246	AT1G53090.1	22739826
AT1G04400.1	KRH55271	AT1G53090.1	22739826
AT1G04400.1	KRH55275	AT1G53090.1	22739826
AT1G04400.1	KRH11936	AT2G18790.1	11089975
AT1G04400.1	KRH36969	AT2G18790.1	11089975
AT1G04400.1	KRH14801	AT2G32950.1	11509693
AT1G04400.1	KRH73341	AT2G32950.1	11509693
AT1G04400.1	KRH14801	AT2G32950.1	22739826
AT1G04400.1	KRH73341	AT2G32950.1	22739826
AT1G04400.1	KRH24463	AT4G34530.1	22739826
AT1G04400.1	KRH29448	AT4G34530.1	22739826
AT1G04400.1	KRH51523	AT4G34530.1	22739826
AT1G04400.1	KRH60839	AT4G34530.1	22739826

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34384	Soybean	cytosol	95.11	93.93
KRH69122	Soybean	cytosol	74.45	78.67
CDX89827	Canola	cytosol, mitochondrion	49.37	72.12
VIT_05s0049g00960.t01	Wine grape	cytosol	72.71	71.36
CDY18229	Canola	cytosol, mitochondrion	62.46	68.75
Bra015313.1-P	Field mustard	cytosol	62.15	68.28
Solyc09g090100.2.1	Tomato	cytosol	67.82	67.72
CDX86636	Canola	cytosol	65.14	66.72
Bra030568.1-P	Field mustard	cytosol	65.14	66.72
AT1G04400.1	Thale cress	cytosol	64.35	66.67
PGSC0003DMT400044219	Potato	cytosol	67.82	66.46
CDY15503	Canola	cytosol	64.67	66.02
KRH13218	Soybean	extracellular	8.68	65.48
GSMUA_Achr5P18570_001	Banana	cytosol	63.09	59.79
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	59.94	57.93
Os02t0625000-01	Rice	cytosol	58.99	57.45
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	58.68	56.97
TraesCS6A01G223700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	58.52	56.81
TraesCS6B01G257600.2	Wheat	cytosol	58.04	56.62
EER88355	Sorghum	mitochondrion	57.89	56.12
HORVU6Hr1G058740.2	Barley	cytosol	58.04	56.1
Zm00001d045944_P007	Maize	cytosol	57.57	55.81
KRH16735	Soybean	cytosol	55.52	51.69
KRH53063	Soybean	cytosol	55.52	51.61
KRH18908	Soybean	cytosol	55.36	51.54
KRH62344	Soybean	cytosol	55.2	51.4
KRH44412	Soybean	mitochondrion, plastid	22.4	25.22
KRH61917	Soybean	plastid	20.19	21.92
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	12.46	17.95
KRH69286	Soybean	plastid	12.46	16.99

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EMBL:ACUP02012753	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N
EnsemblPlantsGene:GLYMA_20G209900	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	UniProt:I1NI99
InterPro:IPR006050	InterPro:IPR014729	EnsemblPlants:KRG92422	ProteinID:KRG92422	ProteinID:KRG92422.1	PFAM:PF00875
PFAM:PF03441	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455
PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI000233DC40
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:44600125..44606118

Molecular Weight (calculated)

72065.4 Da

IEP (calculated)

6.143

GRAVY (calculated)

-0.457

Length

634 amino acids

Sequence
(BLAST)

001: MGSNRTIVWF RRDLRIEDNP ALAAAAKEGS VLPVYIWCPK EEGQFYPGRV SRWWLKQSLA HLDQSLKSLG SRLVLIKTHS TVTALVECVK AIQATKVVFN
101: HLYDPVSLVR DHNIKEKLVE QGISVQSYNG DLLYEPWEVY SESGRAFTTF NAFWKKCLHM QMDIVSVVPP WQLIPAEGKV EECPLEELGL ENESEKPSNA
201: LLGRAWSPGW RNADKALTEF VEQHLLDYSK KRLKVGGDST SLLSPYLHFG ELSVRKVFQV TRMKQILWTN EGNSAGEESV NLFLRAIGLR EYSRYLCFNF
301: PFTHEKALLG HLKFFPWNPD ADIFKNWRQG RTGFPLVDAG MRELWATGWI HNRIRVIVSS FAVKMLLLPW KWGMKYFWDT LLDADLESDI LGWQYISGGL
401: PDGHELERLD NPEIQGVKFD PEGEYVRQWL PELARMPTEW IHHPWDAPLT VLRAAGVELG QNYPKPIIDI DLARERLTEA IFKMWESEAA AKAAGSEPRD
501: EVVVDNSNSL ENLDTRKVVV LGKAPCSTIS ANDQKVPALQ DSKNEPPTRK RPKHMVEEGQ NQDNSQNHNK DTGMSSIDQD ICSTADSSSC KKQCASTSSY
601: SFSVPQQCSS SSNLKWPWQD QTDMEQSSSK DGAM

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.