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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d000219_P001
Zm00001d011746_P002
Zm00001d017778_P001
Zm00001d018207_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d043592_P004
Zm00001d045944_P007
Zm00001d047632_P001
Zm00001d051569_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04400.1 Zm00001d045944_P007 AT1G04400.1 15805487
AT1G04400.1 Zm00001d011746_P002 AT1G53090.1 22739826
AT1G04400.1 Zm00001d043592_P004 AT1G53090.1 22739826
AT1G04400.1 Zm00001d000219_P001 AT2G18790.1 11089975
AT1G04400.1 Zm00001d024238_P001 AT2G18790.1 11089975
AT1G04400.1 Zm00001d025231_P001 AT2G18790.1 11089975
AT1G04400.1 Zm00001d028905_P001 AT2G18790.1 11089975
AT1G04400.1 Zm00001d047632_P001 AT2G18790.1 11089975
AT1G04400.1 Zm00001d018207_P001 AT2G32950.1 11509693
AT1G04400.1 Zm00001d052138_P004 AT2G32950.1 11509693
AT1G04400.1 Zm00001d018207_P001 AT2G32950.1 22739826
AT1G04400.1 Zm00001d052138_P004 AT2G32950.1 22739826
AT1G04400.1 Zm00001d017778_P001 AT4G34530.1 22739826
AT1G04400.1 Zm00001d051569_P001 AT4G34530.1 22739826
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER88355 Sorghum mitochondrion 91.59 91.59
TraesCS6D01G211700.1 Wheat cytosol, golgi, mitochondrion, nucleus 74.46 74.58
TraesCS6A01G223700.1 Wheat cytosol, golgi, mitochondrion, nucleus 74.31 74.43
TraesCS6B01G257600.2 Wheat cytosol 73.55 74.0
Os02t0625000-01 Rice cytosol 73.39 73.73
HORVU6Hr1G058740.2 Barley cytosol 73.55 73.32
CDX89827 Canola cytosol, mitochondrion 40.52 61.06
KRH13218 Soybean extracellular 7.8 60.71
GSMUA_Achr5P18570_001 Banana cytosol 60.24 58.89
KRG92422 Soybean cytosol 55.81 57.57
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 57.03 56.86
KRH69122 Soybean cytosol 51.83 56.5
VIT_05s0049g00960.t01 Wine grape cytosol 55.5 56.19
CDY18229 Canola cytosol, mitochondrion 49.39 56.08
KRH34384 Soybean cytosol 54.89 55.92
Bra015313.1-P Field mustard cytosol 49.08 55.63
Solyc09g090100.2.1 Tomato cytosol 53.06 54.65
PGSC0003DMT400044219 Potato cytosol 53.98 54.56
AT1G04400.1 Thale cress cytosol 50.61 54.09
CDX86636 Canola cytosol 50.15 52.99
Bra030568.1-P Field mustard cytosol 49.85 52.67
CDY15503 Canola cytosol 49.85 52.5
Zm00001d015045_P001 Maize cytosol 14.07 49.2
Zm00001d005288_P001 Maize cytosol 12.08 45.93
Zm00001d015419_P001 Maize cytosol 11.31 44.85
Zm00001d003477_P001 Maize cytosol 46.64 44.33
Zm00001d016915_P002 Maize cytosol, plastid 46.79 43.28
Zm00001d028434_P001 Maize cytosol 12.08 43.17
Zm00001d050850_P001 Maize cytosol 46.64 43.14
Zm00001d046935_P001 Maize plastid 18.5 22.41
Zm00001d015724_P001 Maize plastid 11.16 20.05
Zm00001d029105_P001 Maize plastid 10.09 14.8
Zm00001d047501_P001 Maize plastid 9.94 14.57
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620ProteinID:AQL03464.1ProteinID:AQL03466.1
ProteinID:AQL03471.1InterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_CInterPro:DNA_photolyase_NGO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0005773GO:GO:0006139GO:GO:0006325
GO:GO:0006338GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007623
GO:GO:0008150GO:GO:0008152GO:GO:0009414GO:GO:0009416GO:GO:0009605GO:GO:0009606
GO:GO:0009607GO:GO:0009628GO:GO:0009637GO:GO:0009638GO:GO:0009646GO:GO:0009653
GO:GO:0009719GO:GO:0009785GO:GO:0009791GO:GO:0009882GO:GO:0009908GO:GO:0009909
GO:GO:0009911GO:GO:0009987GO:GO:0010075GO:GO:0010118GO:GO:0010244GO:GO:0010617
GO:GO:0016043GO:GO:0016604GO:GO:0019725GO:GO:0038023GO:GO:0040007GO:GO:0042752
GO:GO:0042802GO:GO:0048574GO:GO:0051607GO:GO:0071949GO:GO:0072387GO:GO:1901371
GO:GO:1902347GO:GO:2000028GO:GO:2000379InterPro:IPR006050InterPro:IPR014729UniProt:K7VU84
PFAM:PF00875PFAM:PF03441PRINTS:PR00147ScanProsite:PS00394PFscan:PS51645PANTHER:PTHR11455
PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425TIGRFAMs:TIGR02766UniParc:UPI000221825E
EnsemblPlantsGene:Zm00001d045944EnsemblPlants:Zm00001d045944_P007EnsemblPlants:Zm00001d045944_T007SEG:seg::
Description
Cryptochrome-2
Coordinates
chr9:-:48378240..48386301
Molecular Weight (calculated)
74248.0 Da
IEP (calculated)
5.557
GRAVY (calculated)
-0.365
Length
654 amino acids
Sequence
(BLAST)
001: MAGPEKTVVW FRRDLRIQDN PALAAAAKGG SVLPIFIWCP SDYGQYYPGR CSRWWLKQSL VHLGKSLELL GCPLVLIRAE DSTLAALLEC VRSISATRVV
101: YNRLYDPISL VLDNKIKNEL PAHGISIQSF NGDLLYEPWD VYDENGQAFT TFNKYWEKCM SLPIEISQYL APTRLVAAPG LANVRCCSID DLGLESSKDV
201: ESSNALLSRA WSPGWRNAEN MLEEFVSYGL LEYSEHGMKV GGSTTSLLSP YLHFGELSVR MIYQLVKMRQ VKWQNEGKSE AEESVRLFLR SIGFREYSRY
301: LCFNYPFTHE RSFLGNLKHY PWLLDEGRFK SWRQGMTGYP LVDAGMRELW ATGWTHNRIR VIVSSFAVKF LQIPWIWGMK YFWDVLLDAD LESDILGWQY
401: ISGSLPDGHE LSRLDNPEVQ GQKYDPDGEY VRTWIPELAR MPTEWIHSPW AAPNSILQVA GVELGFNYPK PIVELHMARE CLDDAISTMW QLDTAAKLAE
501: LDGEVVDDNL NNIRNFDIPK VVLNKKLSPS TSSMEHRVLS TNGKDEKSQP TEVKALYKQI IRDDMMNDSN MDDTCSTANL KVTRKRSSSD SAFNVPSCSS
601: SLVMESRIHH NEPSSVLYSG YFQKTADRDG TSKVEDNDSE DSGTSISRPS KKAA
Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)
001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK
Arabidopsis Description
CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.