Factsheet for Zm00001d015419_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003477_P001
Zm00001d005288_P001
Zm00001d015045_P001
Zm00001d015419_P001
Zm00001d016915_P002
Zm00001d018207_P001
Zm00001d028434_P001
Zm00001d050850_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11509693
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11509693
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11752373
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11752373
AT4G08920.1	Zm00001d003477_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d005288_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015045_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015419_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d016915_P002	AT4G08920.1	15805487
AT4G08920.1	Zm00001d028434_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d050850_P001	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028434_P001	Maize	cytosol	91.52	82.51
Zm00001d005288_P001	Maize	cytosol	85.45	81.98
Zm00001d015045_P001	Maize	cytosol	75.76	66.84
Zm00001d016915_P002	Maize	cytosol, plastid	94.55	22.07
KXG30485	Sorghum	cytosol	93.94	21.92
Zm00001d050850_P001	Maize	cytosol	88.48	20.65
Zm00001d003477_P001	Maize	cytosol	84.24	20.2
Os02t0573200-01	Rice	cytosol	87.27	20.06
TraesCS6B01G224100.2	Wheat	cytosol	83.03	20.03
TraesCS6D01G187200.1	Wheat	cytosol	83.03	19.63
Solyc12g057040.1.1	Tomato	mitochondrion	69.09	19.55
TraesCS6A01G203300.1	Wheat	cytosol	82.42	19.48
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	68.48	19.38
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	81.82	18.91
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	76.36	18.05
Solyc04g074180.2.1	Tomato	cytosol	73.94	17.97
KRH18908	Soybean	cytosol	72.12	17.47
KRH16735	Soybean	cytosol	72.12	17.47
VIT_18s0001g05680.t01	Wine grape	cytosol	72.73	17.37
KRH62344	Soybean	cytosol	71.52	17.33
KRH53063	Soybean	cytosol	71.52	17.3
Bra037880.1-P	Field mustard	cytosol	69.7	16.91
AT4G08920.1	Thale cress	cytosol	69.7	16.89
CDY54706	Canola	cytosol	69.7	16.13
CDX75131	Canola	cytosol	69.7	16.13
Zm00001d045944_P007	Maize	cytosol	44.85	11.31
Zm00001d015724_P001	Maize	plastid	12.73	5.77
Zm00001d047501_P001	Maize	plastid	14.55	5.38
Zm00001d029105_P001	Maize	plastid	13.33	4.93
Zm00001d046935_P001	Maize	plastid	10.3	3.15

Protein Annotations

EnsemblPlants:Zm00001d015419_P001	EnsemblPlants:Zm00001d015419_T001	EnsemblPlantsGene:Zm00001d015419	Gene3D:1.25.40.80	InterPro:Crypto/Photolyase_FAD-like_sf	PANTHER:PTHR11455
PANTHER:PTHR11455:SF44	ProteinID:AQK68808.1	SUPFAM:SSF48173	UniParc:UPI000220C15B	UniProt:A0A1D6H1Q2	MapMan:26.1.2.1.1

Description

Cryptochrome-1

Coordinates

chr5:-:89294499..89295622

Molecular Weight (calculated)

18967.6 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.352

Length

165 amino acids

Sequence
(BLAST)

001: MPDPVAPLLP PKRINSGDLS RCPWEELVFE DESERGSNAL LARAWSPGWQ NADKALTAFL NGPLMDYSVN HKKADSASTS LLSPYLHFDE LSVRKVFHQV
101: RMKRLMWSND GNHAGEESCT MFLCSIGLWE YSRYLTFNHP CSHEKPLLSH LRFIPWVVNE VYFKV

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.