Factsheet for HORVU6Hr1G049950.12

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G079220.2
HORVU6Hr1G049950.12

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	HORVU2Hr1G079220.2	AT4G08920.1	15805487
AT4G08920.1	HORVU6Hr1G049950.12	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G187200.1	Wheat	cytosol	93.28	95.42
TraesCS6A01G203300.1	Wheat	cytosol	92.58	94.7
TraesCS6B01G224100.2	Wheat	cytosol	87.11	90.94
KXG30485	Sorghum	cytosol	82.91	83.73
Zm00001d016915_P002	Maize	cytosol, plastid	81.23	82.04
Zm00001d015419_P001	Maize	cytosol	18.91	81.82
Os02t0573200-01	Rice	cytosol	82.07	81.62
Zm00001d050850_P001	Maize	cytosol	80.39	81.19
Zm00001d028434_P001	Maize	cytosol	20.73	80.87
Zm00001d015045_P001	Maize	cytosol	21.15	80.75
Zm00001d005288_P001	Maize	cytosol	19.33	80.23
HORVU2Hr1G079220.2	Barley	cytosol	72.97	73.17
Solyc12g057040.1.1	Tomato	mitochondrion	56.86	69.64
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	56.72	69.47
KRH18908	Soybean	cytosol	65.41	68.58
Solyc04g074180.2.1	Tomato	cytosol	65.13	68.48
KRH16735	Soybean	cytosol	65.13	68.28
KRH62344	Soybean	cytosol	65.13	68.28
KRH53063	Soybean	cytosol	64.85	67.89
VIT_18s0001g05680.t01	Wine grape	cytosol	65.69	67.87
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	65.83	67.34
Bra037880.1-P	Field mustard	cytosol	63.87	67.06
AT4G08920.1	Thale cress	cytosol	63.59	66.67
CDY54706	Canola	cytosol	63.87	63.96
CDX75131	Canola	cytosol	63.87	63.96
HORVU6Hr1G058740.2	Barley	cytosol	43.28	47.1
HORVU6Hr1G037460.6	Barley	plastid	21.01	25.95
HORVU7Hr1G109800.2	Barley	plastid	18.21	21.92
HORVU7Hr1G080580.2	Barley	plastid	9.8	14.52

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	UniProt:A0A287U4W2	EMBL:AK361689
ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C
InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	EnsemblPlantsGene:HORVU6Hr1G049950	EnsemblPlants:HORVU6Hr1G049950.12	InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875
PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766
UniParc:UPI000B4714BF	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:302447332..302450443

Molecular Weight (calculated)

80472.2 Da

IEP (calculated)

5.429

GRAVY (calculated)

-0.452

Length

714 amino acids

Sequence
(BLAST)

001: CRVMSASLSM SGGAGEAATR TVVWFRRDLR VEDNPALAAA ARTAGEVVPA YVWAPEEDGP YYPGRVSRWW LSQSLKHLDA SLRRLGASRL VTRRSTDTVA
101: ALLELVRSTG ATHLFFNHLY DPLSLVRDHR VKQVLAAEGI SVQSFNSDLL YEPWEVLDDH GSPFTMFTSF WNKCLCMVDP PAPMLPPKRI NSGDLTRCSS
201: DDLIFEDDSE RGSNALLARA WSPGWQNADK AFTAFINGPL IDYSVNRKKA DSANTSLLSP YLHFGELSVR KVFHQVRMKQ LTWSNESNRD GEEGCSLFLR
301: SIGLREYSRY LAFNHPCSHE KPLLAHLRFF PWVVNEVYFK VWRQGRTGYP LVDAGMRELW ATGWLHDRIR VVVSSFFVKV LQLPWRWGMK YFWDTLLDAD
401: LESDALGWQY ISGSLPDGRE LDRIDNPQFE GYKFDPYGEY VRRWLPELAR LPTEWIHHPW DAPESVLQAA GIELGSNYPL PIVELDEAKS RLQDALSEMW
501: ELEAASRAEI ENGMEEGLGD SSDEPPIAFP QELQHMEVDR ATSHTPATAG PARRRADQMV PSITSSLVRA ETETELSAVF ESEVSRPEVP SQVHFQAQPR
601: MESREQVASD GTAARYNQQY TLHRVQGGGI APSTSEASSS WTGREGGVVP VWSPPAASGH SDPYAADETD ISSRSYLDRN PQSHNRLMNW NQLSQSSWMN
701: NSRLPSGKLL SVCD

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.