Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037880.1-P | Field mustard | cytosol | 94.42 | 94.56 |
| CDX75131 | Canola | cytosol | 94.86 | 90.6 |
| CDY54706 | Canola | cytosol | 94.42 | 90.18 |
| KRH18908 | Soybean | cytosol | 78.56 | 78.56 |
| PGSC0003DMT400022039 | Potato | cytosol, mitochondrion, plastid | 67.11 | 78.39 |
| Solyc04g074180.2.1 | Tomato | cytosol | 78.12 | 78.35 |
| VIT_18s0001g05680.t01 | Wine grape | cytosol | 79.44 | 78.29 |
| KRH62344 | Soybean | cytosol | 78.27 | 78.27 |
| KRH16735 | Soybean | cytosol | 78.27 | 78.27 |
| Solyc12g057040.1.1 | Tomato | mitochondrion | 66.96 | 78.22 |
| KRH53063 | Soybean | cytosol | 78.12 | 78.01 |
| Zm00001d028434_P001 | Maize | cytosol | 18.94 | 70.49 |
| Zm00001d015045_P001 | Maize | cytosol | 19.24 | 70.05 |
| Zm00001d005288_P001 | Maize | cytosol | 17.62 | 69.77 |
| Zm00001d015419_P001 | Maize | cytosol | 16.89 | 69.7 |
| GSMUA_Achr6P02100_001 | Banana | cytosol, plastid | 69.9 | 68.19 |
| Os04t0452100-02 | Rice | cytosol | 68.14 | 66.29 |
| TraesCS2D01G317500.1 | Wheat | cytosol | 66.67 | 65.23 |
| TraesCS6D01G187200.1 | Wheat | cytosol | 66.81 | 65.19 |
| TraesCS6A01G203300.1 | Wheat | cytosol | 66.67 | 65.04 |
| KXG30485 | Sorghum | cytosol | 67.11 | 64.64 |
| KXG26438 | Sorghum | cytosol | 67.11 | 64.37 |
| Zm00001d016915_P002 | Maize | cytosol, plastid | 66.81 | 64.36 |
| Zm00001d003477_P001 | Maize | cytosol | 64.61 | 63.95 |
| TraesCS2A01G340000.1 | Wheat | cytosol | 66.81 | 63.9 |
| Os02t0573200-01 | Rice | cytosol | 67.11 | 63.65 |
| TraesCS2B01G337900.1 | Wheat | cytosol | 66.52 | 63.62 |
| HORVU6Hr1G049950.12 | Barley | cytosol, mitochondrion | 66.67 | 63.59 |
| Zm00001d050850_P001 | Maize | cytosol | 65.93 | 63.51 |
| TraesCS6B01G224100.2 | Wheat | cytosol | 63.73 | 63.45 |
| HORVU2Hr1G079220.2 | Barley | cytosol | 65.2 | 62.36 |
| AT1G04400.1 | Thale cress | cytosol | 45.52 | 50.65 |
| AT3G15620.1 | Thale cress | mitochondrion | 20.85 | 25.54 |
| AT5G24850.1 | Thale cress | plastid | 18.06 | 21.62 |
| AT2G47590.1 | Thale cress | cytosol | 9.4 | 14.32 |
Protein Annotations
| Gene3D:1.10.579.10 | Gene3D:1.25.40.80 | PDB:1U3C | PDB:1U3D | MapMan:26.1.2.1.1 | Gene3D:3.40.50.620 |
| EntrezGene:826470 | ProteinID:AAD17364.1 | ProteinID:AEE82696.1 | EMBL:AF361588 | ArrayExpress:AT4G08920 | EnsemblPlantsGene:AT4G08920 |
| RefSeq:AT4G08920 | TAIR:AT4G08920 | RefSeq:AT4G08920-TAIR-G | EnsemblPlants:AT4G08920.1 | TAIR:AT4G08920.1 | EMBL:AY124863 |
| ProteinID:CAB78016.1 | Symbol:CRY1 | ncoils:Coil | InterPro:Crypto/Photolyase_FAD-like_sf | InterPro:Crypto/Photolyase_N_sf | InterPro:Cryptochr/Photolyase_FAD-bd |
| InterPro:Cryptochrome/DNA_photolyase_1 | InterPro:Cryptochrome_C | InterPro:Cryptochrome_pln | InterPro:DNA_photolyase_1_CS_C | InterPro:DNA_photolyase_N | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008219 | GO:GO:0009414 | GO:GO:0009416 | GO:GO:0009583 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009638 | GO:GO:0009640 | GO:GO:0009644 |
| GO:GO:0009646 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009785 | GO:GO:0009791 | GO:GO:0009881 |
| GO:GO:0009882 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010075 | GO:GO:0010114 | GO:GO:0010117 |
| GO:GO:0010118 | GO:GO:0010218 | GO:GO:0010244 | GO:GO:0010310 | GO:GO:0010343 | GO:GO:0010617 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016301 | GO:GO:0016604 | GO:GO:0016605 | GO:GO:0016740 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019725 | GO:GO:0038023 | GO:GO:0040007 | GO:GO:0042752 |
| GO:GO:0042802 | GO:GO:0045454 | GO:GO:0046283 | GO:GO:0046777 | GO:GO:0046872 | GO:GO:0050896 |
| GO:GO:0051510 | GO:GO:0055114 | GO:GO:0060918 | GO:GO:0071000 | GO:GO:0071949 | GO:GO:0072387 |
| GO:GO:0099402 | GO:GO:1900426 | GO:GO:1901332 | GO:GO:1901371 | GO:GO:1901529 | GO:GO:1901672 |
| GO:GO:1902347 | GO:GO:1902448 | GO:GO:2000377 | InterPro:IPR006050 | InterPro:IPR014729 | RefSeq:NP_567341.1 |
| PFAM:PF00875 | PFAM:PF03441 | PFAM:PF12546 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00147 | ScanProsite:PS00394 |
| ScanProsite:PS00691 | PFscan:PS51645 | PANTHER:PTHR11455 | PANTHER:PTHR11455:SF44 | UniProt:Q43125 | InterPro:Rossmann-like_a/b/a_fold |
| EMBL:S66907 | EMBL:S66909 | SUPFAM:SSF48173 | SUPFAM:SSF52425 | TIGRFAMs:TIGR02766 | UniParc:UPI000009CFFC |
| SEG:seg | : | : | : | : | : |
Description
CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
Coordinates
chr4:+:5723651..5727268
Molecular Weight (calculated)
76698.7 Da
IEP (calculated)
5.035
GRAVY (calculated)
-0.468
Length
681 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.