Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015419_P001 | Maize | cytosol | 81.98 | 85.45 |
| Zm00001d028434_P001 | Maize | cytosol | 86.63 | 81.42 |
| Zm00001d015045_P001 | Maize | cytosol | 70.35 | 64.71 |
| Zm00001d016915_P002 | Maize | cytosol, plastid | 93.02 | 22.63 |
| KXG30485 | Sorghum | cytosol | 92.44 | 22.49 |
| Zm00001d050850_P001 | Maize | cytosol | 87.21 | 21.22 |
| Zm00001d003477_P001 | Maize | cytosol | 82.56 | 20.64 |
| Os02t0573200-01 | Rice | cytosol | 86.05 | 20.61 |
| TraesCS6B01G224100.2 | Wheat | cytosol | 81.4 | 20.47 |
| Solyc12g057040.1.1 | Tomato | mitochondrion | 68.6 | 20.24 |
| PGSC0003DMT400022039 | Potato | cytosol, mitochondrion, plastid | 68.6 | 20.24 |
| TraesCS6D01G187200.1 | Wheat | cytosol | 81.4 | 20.06 |
| TraesCS6A01G203300.1 | Wheat | cytosol | 80.81 | 19.91 |
| HORVU6Hr1G049950.12 | Barley | cytosol, mitochondrion | 80.23 | 19.33 |
| GSMUA_Achr6P02100_001 | Banana | cytosol, plastid | 77.33 | 19.05 |
| Solyc04g074180.2.1 | Tomato | cytosol | 73.26 | 18.56 |
| KRH18908 | Soybean | cytosol | 72.09 | 18.21 |
| KRH16735 | Soybean | cytosol | 72.09 | 18.21 |
| KRH62344 | Soybean | cytosol | 71.51 | 18.06 |
| KRH53063 | Soybean | cytosol | 71.51 | 18.04 |
| VIT_18s0001g05680.t01 | Wine grape | cytosol | 72.09 | 17.95 |
| Bra037880.1-P | Field mustard | cytosol | 69.77 | 17.65 |
| AT4G08920.1 | Thale cress | cytosol | 69.77 | 17.62 |
| CDY54706 | Canola | cytosol | 69.77 | 16.83 |
| CDX75131 | Canola | cytosol | 69.77 | 16.83 |
| Zm00001d045944_P007 | Maize | cytosol | 45.93 | 12.08 |
| Zm00001d047501_P001 | Maize | plastid | 15.7 | 6.05 |
| Zm00001d015724_P001 | Maize | plastid | 12.79 | 6.04 |
| Zm00001d029105_P001 | Maize | plastid | 14.53 | 5.61 |
| Zm00001d046935_P001 | Maize | plastid | 12.21 | 3.89 |
Protein Annotations
| EnsemblPlants:Zm00001d005288_P001 | EnsemblPlants:Zm00001d005288_T001 | EnsemblPlantsGene:Zm00001d005288 | Gene3D:1.25.40.80 | InterPro:Crypto/Photolyase_FAD-like_sf | PANTHER:PTHR11455 |
| PANTHER:PTHR11455:SF44 | ProteinID:ONM20764.1 | SEG:seg | SUPFAM:SSF48173 | UniParc:UPI0008437D21 | UniProt:A0A1D6ELJ8 |
| MapMan:26.1.2.1.1 | : | : | : | : | : |
Description
Cryptochrome-1
Coordinates
chr2:-:167728803..167729710
Molecular Weight (calculated)
19455.2 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.426
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWNRCLCMP DPTAPLLPPK RINSGDLSRC PWDELVFEDE SERGSNALLA RAWSPGWQNA DKALTAFLNG SLMDYSVNRK KIDSASTSLL SPYLHFSELS
101: VRKVFHQVRM KRLMWSNDGN HAGEESCTLF LCSIGLREYS RYLTFNHPCS HEKPLLSCRT SGSSPGSSMR CT
101: VRKVFHQVRM KRLMWSNDGN HAGEESCTLF LCSIGLREYS RYLTFNHPCS HEKPLLSCRT SGSSPGSSMR CT
001: MASTVSVQPG RIRILKKGSW QPLDQTVGPV VYWMFRDQRL KDNWALIHAV DLANRTNAPV AVVFNLFDQF LDAKARQLGF MLKGLRQLHH QIDSLQIPFF
101: LLQGDAKETI PNFLTECGAS HLVTDFSPLR EIRRCKDEVV KRTSDSLAIH EVDAHNVVPM WAASSKLEYS ARTIRGKINK LLPDYLIEFP KLEPPKKKWT
201: GMMDKKLVDW DSLIDKVVRE GAEVPEIEWC VPGEDAGIEV LMGNKDGFLT KRLKNYSTDR NNPIKPKALS GLSPYLHFGQ VSAQRCALEA RKVRSTSPQA
301: VDTFLEELIV RRELSDNFCY YQPHYDSLKG AWEWARKSLM DHASDKREHI YSLEQLEKGL TADPLEMVYQ GKMHGFMRMY WAKKILEWTK GPEEALSISI
401: YLNNKYEIDG RDPSGYVGCM WSICGVHDQG WKERPVFGKI RYMNYAGCKR KFNVDSYISY VKSLVSVTKK KRKAEEQLTR DSVDPKITIV
101: LLQGDAKETI PNFLTECGAS HLVTDFSPLR EIRRCKDEVV KRTSDSLAIH EVDAHNVVPM WAASSKLEYS ARTIRGKINK LLPDYLIEFP KLEPPKKKWT
201: GMMDKKLVDW DSLIDKVVRE GAEVPEIEWC VPGEDAGIEV LMGNKDGFLT KRLKNYSTDR NNPIKPKALS GLSPYLHFGQ VSAQRCALEA RKVRSTSPQA
301: VDTFLEELIV RRELSDNFCY YQPHYDSLKG AWEWARKSLM DHASDKREHI YSLEQLEKGL TADPLEMVYQ GKMHGFMRMY WAKKILEWTK GPEEALSISI
401: YLNNKYEIDG RDPSGYVGCM WSICGVHDQG WKERPVFGKI RYMNYAGCKR KFNVDSYISY VKSLVSVTKK KRKAEEQLTR DSVDPKITIV
Arabidopsis Description
PHR1Deoxyribodipyrimidine photo-lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9SB00]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.