Factsheet for TraesCS6D01G187200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G340000.1
TraesCS2B01G337900.1
TraesCS2D01G317500.1
TraesCS6A01G203300.1
TraesCS6A01G326100.1
TraesCS6B01G224100.2
TraesCS6B01G356400.1
TraesCS6D01G187200.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS2A01G340000.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2B01G337900.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2D01G317500.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6A01G203300.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6B01G224100.2	AT4G08920.1	15805487
AT4G08920.1	TraesCS6D01G187200.1	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G203300.1	Wheat	cytosol	98.42	98.42
TraesCS6B01G224100.2	Wheat	cytosol	91.83	93.71
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	95.42	93.28
KXG30485	Sorghum	cytosol	85.96	84.87
Zm00001d015419_P001	Maize	cytosol	19.63	83.03
Os02t0573200-01	Rice	cytosol	85.24	82.87
Zm00001d016915_P002	Maize	cytosol, plastid	83.81	82.74
Zm00001d050850_P001	Maize	cytosol	83.24	82.18
Zm00001d028434_P001	Maize	cytosol	21.49	81.97
Zm00001d015045_P001	Maize	cytosol	21.92	81.82
Zm00001d005288_P001	Maize	cytosol	20.06	81.4
TraesCS2D01G317500.1	Wheat	cytosol	78.37	78.59
Solyc12g057040.1.1	Tomato	mitochondrion	57.88	69.3
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	57.74	69.13
Solyc04g074180.2.1	Tomato	cytosol	67.19	69.07
KRH62344	Soybean	cytosol	67.34	69.02
KRH18908	Soybean	cytosol	67.34	69.02
KRH16735	Soybean	cytosol	67.05	68.72
KRH53063	Soybean	cytosol	66.91	68.48
VIT_18s0001g05680.t01	Wine grape	cytosol	67.62	68.31
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	67.91	67.91
Bra037880.1-P	Field mustard	cytosol	65.62	67.35
AT4G08920.1	Thale cress	cytosol	65.19	66.81
CDY54706	Canola	cytosol	65.62	64.24
CDX75131	Canola	cytosol	65.62	64.24
TraesCS6D01G211700.1	Wheat	cytosol, golgi, mitochondrion, nucleus	44.56	47.63
TraesCS6D01G167100.1	Wheat	plastid	21.49	27.52
TraesCS7D01G476200.1	Wheat	plastid	18.34	21.44
TraesCS7D01G334900.2	Wheat	plastid	9.89	15.47

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C
InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050
InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394
ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173
SUPFAM:SSF52425	TIGRFAMs:TIGR02766	EnsemblPlantsGene:TraesCS6D01G187200	EnsemblPlants:TraesCS6D01G187200.1	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:249992525..249995763

Molecular Weight (calculated)

79053.6 Da

IEP (calculated)

5.604

GRAVY (calculated)

-0.491

Length

698 amino acids

Sequence
(BLAST)

001: MSASPSMSGG AGERTRTVVW FRRDLRVEDN PALAAAARTA GEVVPAYVWA PEEDGPYYPG RVSRWWLSQS LKHLDASLRR LGATRLVTRR STDTVAALLE
101: LVRSTGATHL FFNHLYDPLS LVRDHRVKQV LGAEGITVQS FNSDLLYEPW EVLDDHGCPF TMFTPFWNKC LCMVDPPAPM LPPKRINSGD LSRCCSSDDL
201: IFEDESERGS NALLARAWSP GWQNADKAFT AFINGPLIDY SVNRKKADSA NTSLLSPYLH FGELSVRKVF HQVRMKQLTW SNESNRDGEE GCSLFLRSIG
301: LREYSRYLAF NHPCSHEKPL LAHLRFFPWV VNEVYFKVWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES
401: DALGWQYISG SLPDGRELDR IDNPQFEGYK FDPYGEYVRR WLPELARLPT EWIHHPWDAP ESVLRAAGIE LGSNYPLPIV ELDEAKSRLQ DALSEMWELE
501: AASRAEIENG MEEGLGDSSD EPPIAFPQEL QHMEVDRATI HTPATAGRRR ADQMVPSITS SLVRAETETE LSAAFESEVT RPEVPSQVHF QPQTRMEVRD
601: EGVSDGTAAR YNGVQQQQQY TLHRHRVQGG IAPSTSEASS SWTGREGGVV PVWSPPAASG HSDPYAADET DISSRSYLDR HPQQSHRLMN WNQLSQSS

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.