Factsheet for Zm00001d015045_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003477_P001
Zm00001d005288_P001
Zm00001d015045_P001
Zm00001d015419_P001
Zm00001d016915_P002
Zm00001d018207_P001
Zm00001d028434_P001
Zm00001d050850_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11509693
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11509693
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11752373
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11752373
AT4G08920.1	Zm00001d003477_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d005288_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015045_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015419_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d016915_P002	AT4G08920.1	15805487
AT4G08920.1	Zm00001d028434_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d050850_P001	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015419_P001	Maize	cytosol	66.84	75.76
Zm00001d028434_P001	Maize	cytosol	70.59	72.13
Zm00001d005288_P001	Maize	cytosol	64.71	70.35
Zm00001d016915_P002	Maize	cytosol, plastid	94.12	24.89
KXG30485	Sorghum	cytosol	92.51	24.47
Zm00001d050850_P001	Maize	cytosol	87.17	23.06
TraesCS6B01G224100.2	Wheat	cytosol	81.82	22.37
Os02t0573200-01	Rice	cytosol	85.56	22.28
Zm00001d003477_P001	Maize	cytosol	81.82	22.24
TraesCS6D01G187200.1	Wheat	cytosol	81.82	21.92
TraesCS6A01G203300.1	Wheat	cytosol	81.28	21.78
Solyc12g057040.1.1	Tomato	mitochondrion	67.38	21.61
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	66.31	21.27
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	80.75	21.15
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	77.01	20.63
KRH62344	Soybean	cytosol	73.26	20.12
KRH53063	Soybean	cytosol	72.73	19.94
Solyc04g074180.2.1	Tomato	cytosol	71.12	19.59
Bra037880.1-P	Field mustard	cytosol	70.05	19.26
AT4G08920.1	Thale cress	cytosol	70.05	19.24
KRH18908	Soybean	cytosol	70.05	19.24
KRH16735	Soybean	cytosol	69.52	19.09
VIT_18s0001g05680.t01	Wine grape	cytosol	69.52	18.81
CDY54706	Canola	cytosol	70.05	18.37
CDX75131	Canola	cytosol	70.05	18.37
Zm00001d045944_P007	Maize	cytosol	49.2	14.07
Zm00001d015724_P001	Maize	plastid	13.37	6.87
Zm00001d046935_P001	Maize	plastid	19.25	6.67
Zm00001d047501_P001	Maize	plastid	14.97	6.28
Zm00001d029105_P001	Maize	plastid	13.9	5.83

Protein Annotations

EnsemblPlants:Zm00001d015045_P001	EnsemblPlants:Zm00001d015045_T001	EnsemblPlantsGene:Zm00001d015045	Gene3D:1.10.579.10	Gene3D:1.25.40.80	InterPro:Crypto/Photolyase_FAD-like_sf
InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:DNA_photolyase_1_CS_C	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44
PFAM:PF03441	PRINTS:PR00147	ProteinID:AQK67947.1	ScanProsite:PS00394	SUPFAM:SSF48173	SUPFAM:SSF52425
UniParc:UPI0008456E47	UniProt:A0A1D6GYW3	MapMan:26.1.2.1.1	:	:	:

Description

Cryptochrome-1

Coordinates

chr5:+:73083286..73084113

Molecular Weight (calculated)

21978.4 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.514

Length

187 amino acids

Sequence
(BLAST)

001: MYEPWEVLDE DRRPFTMFAP FWNRCLCMPD PATPQLPPKR INSGDLSRCP WDELNANKPL TAFLNGPLMD YSVNRKKADS ASTSLLSPYL HFGELSVRKV
101: FHQVRMKRLM WSNDGNHASE ESCTLFFRSI GLREYSRHLT FNHPCSHEKP LPLHLRFFPW VVNEVYFKVW RQGRTGYPLV DAGMREL

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.