Factsheet for Solyc04g074180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g074180.2.1
Solyc12g005950.1.1
Solyc12g057040.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Solyc12g005950.1.1	AT2G32950.1	11509693
AT4G08920.1	Solyc12g005950.1.1	AT2G32950.1	11752373
AT4G08920.1	Solyc04g074180.2.1	AT4G08920.1	15805487
AT4G08920.1	Solyc12g057040.1.1	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g057040.1.1	Tomato	mitochondrion	72.02	83.88
KRH18908	Soybean	cytosol	82.47	82.23
KRH16735	Soybean	cytosol	82.03	81.79
VIT_18s0001g05680.t01	Wine grape	cytosol	83.06	81.62
KRH62344	Soybean	cytosol	80.85	80.62
KRH53063	Soybean	cytosol	80.41	80.06
AT4G08920.1	Thale cress	cytosol	78.35	78.12
Bra037880.1-P	Field mustard	cytosol	77.61	77.5
CDX75131	Canola	cytosol	77.91	74.19
Zm00001d015419_P001	Maize	cytosol	17.97	73.94
CDY54706	Canola	cytosol	77.61	73.91
Zm00001d028434_P001	Maize	cytosol	19.88	73.77
Zm00001d005288_P001	Maize	cytosol	18.56	73.26
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	73.49	71.49
Zm00001d015045_P001	Maize	cytosol	19.59	71.12
Os04t0452100-02	Rice	cytosol	69.96	67.86
TraesCS2D01G317500.1	Wheat	cytosol	69.22	67.53
TraesCS6D01G187200.1	Wheat	cytosol	69.07	67.19
Zm00001d003477_P001	Maize	cytosol	67.89	67.01
TraesCS6A01G203300.1	Wheat	cytosol	68.78	66.91
KXG30485	Sorghum	cytosol	69.51	66.76
Os02t0573200-01	Rice	cytosol	70.4	66.57
Zm00001d016915_P002	Maize	cytosol, plastid	69.07	66.34
TraesCS2A01G340000.1	Wheat	cytosol	69.22	66.01
TraesCS2B01G337900.1	Wheat	cytosol	68.92	65.73
KXG26438	Sorghum	cytosol	68.48	65.49
Zm00001d050850_P001	Maize	cytosol	68.04	65.35
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	68.48	65.13
TraesCS6B01G224100.2	Wheat	cytosol	65.24	64.77
HORVU2Hr1G079220.2	Barley	cytosol	67.89	64.75
Solyc09g090100.2.1	Tomato	cytosol	49.19	52.6
Solyc12g042910.1.1	Tomato	mitochondrion	20.62	25.97
Solyc08g074270.2.1	Tomato	nucleus	17.97	21.14
Solyc09g075180.2.1	Tomato	cytosol	10.01	15.04

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ProteinID:AAF72555.1	EMBL:AF130423
InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023
InterPro:IPR006050	InterPro:IPR014729	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147
ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	UniProt:Q9XHD8
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	EnsemblPlantsGene:Solyc04g074180.2	EnsemblPlants:Solyc04g074180.2.1	TIGRFAMs:TIGR02766
UniParc:UPI000009E690	SEG:seg	:	:	:	:

Description

Cryptochrome 1 [Source:UniProtKB/TrEMBL;Acc:Q9XHD8]

Coordinates

chr4:+:60179158..60184539

Molecular Weight (calculated)

76923.9 Da

IEP (calculated)

5.696

GRAVY (calculated)

-0.496

Length

679 amino acids

Sequence
(BLAST)

001: MSGGGCSIVW FRRDLRVEDN PALAAGVRAG AVIAVFIYAP EEEGHYYPGR VSRWWLKQSL AHLDSSLKSL GTSLITKRST DSISSLLEVV KSTGATQLFF
101: NHLYDPISLV RDHRTKEILT AQGISVRSFN ADLLYEPWEV NDDEGRPFTT FSAFWEKCLS MPYDPEAPLL PPKRIISGDA SRCPSDNLVF EDESEKGSNA
201: LLARAWSPGW SNADKALTTF VNGPLLEYSQ NRRKADSATT SFLSPHLHFG EVSVRKVFHF VRIKQVLWAN EGNKAGEESV NLFLKSIGLR EYSRYMSFNH
301: PYSHERPLLG HLRYFPWVVD EGYFKAWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FFVKVLQLPW RWGMKYFWDT LLDADLESDA LGWQYISGTL
401: PDGRELDRID NPQFVGYKCD PHGEYVRRWL PELARLPTEW IHHPWNAPES VLEAAGIELG SNYPLPIVEI DSAKVRLEQA LSQMWQNDAA ARAAIENGME
501: EGHGDSADSP IAFPQAMHME MDHEPVRNNP VIVTVRRYED QMVPSMTSSL FRAEDEENSV DIRNSVVESR AEVPTDINVA EVHRRDTRDQ AVMQTARTNA
601: TPHFNFAVGR RNSEDSTAES SSSTRERDGG VVPTWSPSSS NYSDQYVGDD NGIGTSSSYL QRHPQSHQLM NWQRLSQTG

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.