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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • plastid 3
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g074180.2.1
Solyc12g005950.1.1
Solyc12g057040.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G08920.1 Solyc12g005950.1.1 AT2G32950.1 11509693
AT4G08920.1 Solyc12g005950.1.1 AT2G32950.1 11752373
AT4G08920.1 Solyc04g074180.2.1 AT4G08920.1 15805487
AT4G08920.1 Solyc12g057040.1.1 AT4G08920.1 15805487
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400022039 Potato cytosol, mitochondrion, plastid 98.28 98.28
Solyc04g074180.2.1 Tomato cytosol 83.88 72.02
Zm00001d015419_P001 Maize cytosol 19.55 69.09
Zm00001d005288_P001 Maize cytosol 20.24 68.6
VIT_18s0001g05680.t01 Wine grape cytosol 79.93 67.44
KRH62344 Soybean cytosol 78.73 67.4
Zm00001d015045_P001 Maize cytosol 21.61 67.38
Bra037880.1-P Field mustard cytosol 78.56 67.35
KRH18908 Soybean cytosol 78.56 67.25
Zm00001d028434_P001 Maize cytosol 21.1 67.21
KRH53063 Soybean cytosol 78.56 67.16
AT4G08920.1 Thale cress cytosol 78.22 66.96
KRH16735 Soybean cytosol 78.04 66.81
CDX75131 Canola cytosol 78.9 64.52
CDY54706 Canola cytosol 78.56 64.24
GSMUA_Achr6P02100_001 Banana cytosol, plastid 72.73 60.74
Os04t0452100-02 Rice cytosol 70.67 58.86
Zm00001d003477_P001 Maize cytosol 69.13 58.58
TraesCS2D01G317500.1 Wheat cytosol 69.81 58.48
Zm00001d016915_P002 Maize cytosol, plastid 70.67 58.27
TraesCS6A01G203300.1 Wheat cytosol 69.47 58.02
KXG30485 Sorghum cytosol 70.33 57.99
TraesCS6D01G187200.1 Wheat cytosol 69.3 57.88
TraesCS6B01G224100.2 Wheat cytosol 67.41 57.46
KXG26438 Sorghum cytosol 69.64 57.18
Os02t0573200-01 Rice cytosol 70.33 57.1
TraesCS2A01G340000.1 Wheat cytosol 69.64 57.02
TraesCS2B01G337900.1 Wheat cytosol 69.47 56.88
HORVU6Hr1G049950.12 Barley cytosol, mitochondrion 69.64 56.86
Zm00001d050850_P001 Maize cytosol 68.95 56.86
HORVU2Hr1G079220.2 Barley cytosol 67.92 55.62
Solyc09g090100.2.1 Tomato cytosol 52.66 48.35
Solyc12g042910.1.1 Tomato mitochondrion 24.01 25.97
Solyc08g074270.2.1 Tomato nucleus 20.07 20.28
Solyc09g075180.2.1 Tomato cytosol 11.66 15.04
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80MapMan:26.1.2.1.1Gene3D:3.40.50.620ProteinID:AAL02093.1EMBL:AF348461
ncoils:CoilInterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_C
InterPro:Cryptochrome_plnInterPro:DNA_photolyase_1_CS_CInterPro:DNA_photolyase_NGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0006139
GO:GO:0006464GO:GO:0006810GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0007623GO:GO:0008150GO:GO:0008152GO:GO:0008219GO:GO:0009414GO:GO:0009416
GO:GO:0009583GO:GO:0009605GO:GO:0009606GO:GO:0009607GO:GO:0009628GO:GO:0009637
GO:GO:0009638GO:GO:0009640GO:GO:0009644GO:GO:0009646GO:GO:0009653GO:GO:0009719
GO:GO:0009785GO:GO:0009791GO:GO:0009882GO:GO:0009987GO:GO:0009991GO:GO:0010075
GO:GO:0010114GO:GO:0010117GO:GO:0010118GO:GO:0010218GO:GO:0010244GO:GO:0010310
GO:GO:0010343GO:GO:0010617GO:GO:0016043GO:GO:0016049GO:GO:0016301GO:GO:0016604
GO:GO:0016740GO:GO:0019538GO:GO:0019725GO:GO:0038023GO:GO:0040007GO:GO:0042752
GO:GO:0042802GO:GO:0046283GO:GO:0046777GO:GO:0051510GO:GO:0055114GO:GO:0060918
GO:GO:0071000GO:GO:0071949GO:GO:0072387GO:GO:0099402GO:GO:1900426GO:GO:1901332
GO:GO:1901371GO:GO:1901529GO:GO:1901672GO:GO:1902347GO:GO:1902448GO:GO:2000377
InterPro:IPR006050InterPro:IPR014729PFAM:PF00875PFAM:PF03441PFAM:PF12546PRINTS:PR00147
ScanProsite:PS00394PFscan:PS51645PANTHER:PTHR11455PANTHER:PTHR11455:SF44UniProt:Q93VS0InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173SUPFAM:SSF52425EnsemblPlantsGene:Solyc12g057040.1EnsemblPlants:Solyc12g057040.1.1TIGRFAMs:TIGR02766UniParc:UPI000009E6BF
Description
Cryptochrome 1b [Source:UniProtKB/TrEMBL;Acc:Q93VS0]
Coordinates
chr12:+:63108486..63111013
Molecular Weight (calculated)
65969.9 Da
IEP (calculated)
4.900
GRAVY (calculated)
-0.294
Length
583 amino acids
Sequence
(BLAST)
001: MSSGGCSIVW FRRDLRLEDN PALAAAVRAG SVIAVFIWAP EEEGYYCPGR VSRWWIKKSL AHLDSSLKKL GTSLITKRSN DSVSSLLQVV KSTGATRVFF
101: NHLYDPISLV RDNCAKETLS AEGVSVCSFN ADLLYEPWEV VDDESRPFST FSDFWEKCLT MPYDPEAPLL PPKRIISGDA SRCPSDNLVF ESELEKGSNA
201: LLARAWSPGW SNADKALTTF INGPLIEYSK NRSKADSATT SFLSPCLHFG EVSVRKVFHR IRTKQTLWAN EGNKAGEESV NLFLKSIGLR EFSRYMSFYH
301: PYSHERPLLG QLKYFPWLVD EGYFKAWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FSVKVLQLPW TWGMKYFWDT LLDADLESDA LGWQFITGTL
401: PDGCEFLGID NPQFEGYKFD PNGEYVRRWL PELARLPTEW IHHPWDAPES VLQAAGIELG SNYPFPIVEI VAAKERLEEA LSQMWQLEAA ARSAIENGME
501: EGHGDSTDEF VPIAFPQAMQ IEMEANNVPV RNNNPTITAL RRYGDQIVPS MSSSFFRNED EETSVDIRNS VVDSRAEVPI ISM
Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)
001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
Arabidopsis Description
CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.