Factsheet for TraesCS6B01G224100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G340000.1
TraesCS2B01G337900.1
TraesCS2D01G317500.1
TraesCS6A01G203300.1
TraesCS6A01G326100.1
TraesCS6B01G224100.2
TraesCS6B01G356400.1
TraesCS6D01G187200.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11509693
AT4G08920.1	TraesCS6A01G326100.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6B01G356400.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS6D01G305800.1	AT2G32950.1	11752373
AT4G08920.1	TraesCS2A01G340000.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2B01G337900.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS2D01G317500.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6A01G203300.1	AT4G08920.1	15805487
AT4G08920.1	TraesCS6B01G224100.2	AT4G08920.1	15805487
AT4G08920.1	TraesCS6D01G187200.1	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G187200.1	Wheat	cytosol	93.71	91.83
TraesCS6A01G203300.1	Wheat	cytosol	92.98	91.12
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	90.94	87.11
Zm00001d015419_P001	Maize	cytosol	20.03	83.03
Zm00001d015045_P001	Maize	cytosol	22.37	81.82
Zm00001d005288_P001	Maize	cytosol	20.47	81.4
Zm00001d028434_P001	Maize	cytosol	21.34	79.78
KXG30485	Sorghum	cytosol	82.02	79.35
Os02t0573200-01	Rice	cytosol	81.58	77.72
Zm00001d016915_P002	Maize	cytosol, plastid	79.97	77.37
Zm00001d050850_P001	Maize	cytosol	79.68	77.09
TraesCS2B01G337900.1	Wheat	cytosol	75.0	72.05
Solyc12g057040.1.1	Tomato	mitochondrion	57.46	67.41
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	57.31	67.24
KRH62344	Soybean	cytosol	65.2	65.49
KRH18908	Soybean	cytosol	65.2	65.49
KRH16735	Soybean	cytosol	65.06	65.35
Solyc04g074180.2.1	Tomato	cytosol	64.77	65.24
KRH53063	Soybean	cytosol	64.62	64.81
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	66.08	64.76
VIT_18s0001g05680.t01	Wine grape	cytosol	65.2	64.54
Bra037880.1-P	Field mustard	cytosol	63.6	63.97
AT4G08920.1	Thale cress	cytosol	63.45	63.73
CDX75131	Canola	cytosol	63.74	61.15
CDY54706	Canola	cytosol	63.6	61.01
TraesCS6B01G257600.2	Wheat	cytosol	44.01	46.31
TraesCS7B01G392900.2	Wheat	plastid	18.27	20.9
TraesCS7B01G238500.1	Wheat	cytosol, plastid	8.77	13.36

Protein Annotations

Gene3D:1.10.579.10	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N
GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729
PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691
PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02766	EnsemblPlantsGene:TraesCS6B01G224100	EnsemblPlants:TraesCS6B01G224100.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:-:338012256..338015407

Molecular Weight (calculated)

77648.2 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.465

Length

684 amino acids

Sequence
(BLAST)

001: MSASPSMSGG AGERTRTRTV VWFRRDLRVE DNPALAAAAR TAGEVVPAYV WAPEEDGPYY PGRVSRWWLS QSLKHLDASL RRLGATHLFF NHLYDPLSLV
101: RDHRVKQVLG AEGITVQSFN SDLLYEPWEV LDDHGCPFTM FTPFWNKCLC MVDPPAPMLP PKRINSGDLS RCCSSDHLIF EDESERGSNA LLARAWSPGW
201: QNADKAFTAF INGPLIDYSV NRKKADSANT SLLSPYLHFG ELSVRKVFHQ VRMKQLTWSN ESNRDGEEGC SLFLRSIGLR EYSRYLAFNH PCSHEKPLLA
301: HLRFFPWVVN EVYFKVWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FFVKVLQLPW RWGMKYFWDT LLDADLESDA LGWQYISGSL PDGRELDRID
401: NPQFEGYKFD PYGEYVRRWL PELARLPTEW IHHPWDAPES VLQAAGIELG SNYPLPIVEL DEAKSRLQDA LSEMWELEAA SRAEIENGME EGLGDSSDEP
501: PIAFPQELQH MEVDLDRATI HTPATAGRRR ADQMVPSITS SLVRAETETE LSAAFESQVT RPEVPSQVHF QPQTRTEIRD EVASYGTAAR YNGVQQQQQQ
601: YTLHHHRVQG GIAPSTSEAS SSWTGREGGV VPVWSPPAAS GHSDPYAADE LESALPVIVT SDACWMRQQR AAKWKTFAQM HERI

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.