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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400022039
PGSC0003DMT400036075

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G08920.1 PGSC0003DMT400036075 AT2G32950.1 11509693
AT4G08920.1 PGSC0003DMT400036075 AT2G32950.1 11752373
AT4G08920.1 PGSC0003DMT400022039 AT4G08920.1 15805487
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g057040.1.1 Tomato mitochondrion 98.28 98.28
Zm00001d005288_P001 Maize cytosol 20.24 68.6
Zm00001d015419_P001 Maize cytosol 19.38 68.48
VIT_18s0001g05680.t01 Wine grape cytosol 80.45 67.87
Bra037880.1-P Field mustard cytosol 78.73 67.5
KRH53063 Soybean cytosol 78.9 67.45
KRH18908 Soybean cytosol 78.73 67.4
KRH62344 Soybean cytosol 78.73 67.4
AT4G08920.1 Thale cress cytosol 78.39 67.11
KRH16735 Soybean cytosol 78.04 66.81
Zm00001d028434_P001 Maize cytosol 20.93 66.67
Zm00001d015045_P001 Maize cytosol 21.27 66.31
CDX75131 Canola cytosol 79.07 64.66
CDY54706 Canola cytosol 78.73 64.38
GSMUA_Achr6P02100_001 Banana cytosol, plastid 72.9 60.89
Os04t0452100-02 Rice cytosol 70.67 58.86
TraesCS2D01G317500.1 Wheat cytosol 69.64 58.33
Zm00001d003477_P001 Maize cytosol 68.78 58.28
TraesCS6A01G203300.1 Wheat cytosol 69.64 58.17
Zm00001d016915_P002 Maize cytosol, plastid 70.5 58.13
KXG30485 Sorghum cytosol 70.5 58.13
TraesCS6D01G187200.1 Wheat cytosol 69.13 57.74
KXG26438 Sorghum cytosol 69.98 57.46
Os02t0573200-01 Rice cytosol 70.67 57.38
TraesCS6B01G224100.2 Wheat cytosol 67.24 57.31
Zm00001d050850_P001 Maize cytosol 69.13 57.0
TraesCS2A01G340000.1 Wheat cytosol 69.47 56.88
TraesCS2B01G337900.1 Wheat cytosol 69.3 56.74
HORVU6Hr1G049950.12 Barley cytosol, mitochondrion 69.47 56.72
HORVU2Hr1G079220.2 Barley cytosol 67.75 55.48
PGSC0003DMT400044219 Potato cytosol 51.8 46.68
PGSC0003DMT400073684 Potato mitochondrion 24.01 25.97
PGSC0003DMT400076096 Potato cytosol, plastid 19.55 20.92
PGSC0003DMT400081378 Potato cytosol 11.66 15.01
Protein Annotations
Gene3D:1.10.579.10Gene3D:1.25.40.80EntrezGene:102583141MapMan:26.1.2.1.1Gene3D:3.40.50.620ncoils:Coil
InterPro:Crypto/Photolyase_FAD-like_sfInterPro:Crypto/Photolyase_N_sfInterPro:Cryptochr/Photolyase_FAD-bdInterPro:Cryptochrome/DNA_photolyase_1InterPro:Cryptochrome_CInterPro:Cryptochrome_pln
InterPro:DNA_photolyase_1_CS_CInterPro:DNA_photolyase_NGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672
GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005737GO:GO:0006139GO:GO:0006464
GO:GO:0006810GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007623
GO:GO:0008150GO:GO:0008152GO:GO:0008219GO:GO:0009414GO:GO:0009416GO:GO:0009583
GO:GO:0009605GO:GO:0009606GO:GO:0009607GO:GO:0009628GO:GO:0009637GO:GO:0009638
GO:GO:0009640GO:GO:0009644GO:GO:0009646GO:GO:0009653GO:GO:0009719GO:GO:0009785
GO:GO:0009791GO:GO:0009882GO:GO:0009987GO:GO:0009991GO:GO:0010075GO:GO:0010114
GO:GO:0010117GO:GO:0010118GO:GO:0010218GO:GO:0010244GO:GO:0010310GO:GO:0010343
GO:GO:0010617GO:GO:0016043GO:GO:0016049GO:GO:0016301GO:GO:0016604GO:GO:0016740
GO:GO:0019538GO:GO:0019725GO:GO:0038023GO:GO:0040007GO:GO:0042752GO:GO:0042802
GO:GO:0046283GO:GO:0046777GO:GO:0051510GO:GO:0055114GO:GO:0060918GO:GO:0071000
GO:GO:0071949GO:GO:0072387GO:GO:0099402GO:GO:1900426GO:GO:1901332GO:GO:1901371
GO:GO:1901529GO:GO:1901672GO:GO:1902347GO:GO:1902448GO:GO:2000377InterPro:IPR006050
InterPro:IPR014729UniProt:M1AG20PFAM:PF00875PFAM:PF03441PFAM:PF12546EnsemblPlantsGene:PGSC0003DMG400008545
PGSC:PGSC0003DMG400008545EnsemblPlants:PGSC0003DMT400022039PRINTS:PR00147ScanProsite:PS00394PFscan:PS51645PANTHER:PTHR11455
PANTHER:PTHR11455:SF44InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF48173SUPFAM:SSF52425TIGRFAMs:TIGR02766UniParc:UPI000295B9C9
RefSeq:XP_006360269.1:::::
Description
Cryptochrome 1b [Source:PGSC_GENE;Acc:PGSC0003DMG400008545]
Coordinates
chr12:+:55309460..55313424
Molecular Weight (calculated)
66154.1 Da
IEP (calculated)
5.019
GRAVY (calculated)
-0.324
Length
583 amino acids
Sequence
(BLAST)
001: MSSGGCSIVW FRRDLRLEDN PALAAGVRAG SVIAVFIWAP EEEGYYCPGR VSRWWIKKSL AHLDSSLKKL GTSLITKRSN DSVSSLLQVV KSTGATRVFF
101: NHLYDPISLV RDNRAKETLS AEGVSVCSFN ADLLYEPWEV VDDEGHPFST FSDFWEKCLT MPYDPEAPLL PPKRIISGEA SRCPSDNLVF ESELEKGSNA
201: LLARAWSPGW SNADKALTTF INGPLIEYSK NRSKADSATT SFLSPRLHFG EVSVRKVFHR IRTKQTLWAN EGNKAGEESV NLFLKSIGLR EFSRYMSFYH
301: PYSHERPLLG QLKYFPWLVD EGYFKAWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FSVKVLQLPW TWGMKYFWDT LLDADLESDA LGWQFITGTL
401: PDGCEFLGID NPQFEGYKFD PNGEYVRRWL PELVRLPTEW IHHPWDAPES VLQAAGIELG SNYPFPIVEI VAAKERLEEA LSQMWQLEAA ARSAIENGME
501: EGHGDSTDEF VPIAFPQAMH MEMEANNVPV RNNNPTITAL RRYEDQIVPS MSSSFFRNED EETSVDIRNS VVDSRAEVPI ISM
Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)
001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G
Arabidopsis Description
CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.