Factsheet for Os04t0452100-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0573200-01
Os02t0771100-01
Os04t0452100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Os02t0771100-01	AT2G32950.1	11509693
AT4G08920.1	Os02t0771100-01	AT2G32950.1	11752373
AT4G08920.1	Os02t0573200-01	AT4G08920.1	15805487
AT4G08920.1	Os04t0452100-02	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G317500.1	Wheat	cytosol	88.29	88.79
TraesCS2B01G337900.1	Wheat	cytosol	88.57	87.08
TraesCS2A01G340000.1	Wheat	cytosol	88.57	87.08
KXG26438	Sorghum	cytosol	87.0	85.77
HORVU2Hr1G079220.2	Barley	cytosol	86.0	84.55
Zm00001d003477_P001	Maize	cytosol	82.43	83.87
Os02t0573200-01	Rice	cytosol	83.86	81.75
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	70.86	71.06
VIT_18s0001g05680.t01	Wine grape	cytosol	70.0	70.91
Solyc12g057040.1.1	Tomato	mitochondrion	58.86	70.67
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	58.86	70.67
KRH18908	Soybean	cytosol	68.71	70.63
KRH62344	Soybean	cytosol	68.29	70.19
KRH16735	Soybean	cytosol	68.14	70.04
Solyc04g074180.2.1	Tomato	cytosol	67.86	69.96
KRH53063	Soybean	cytosol	67.86	69.65
Bra037880.1-P	Field mustard	cytosol	66.57	68.53
AT4G08920.1	Thale cress	cytosol	66.29	68.14
CDX75131	Canola	cytosol	66.71	65.5
CDY54706	Canola	cytosol	66.57	65.36
Os02t0625000-01	Rice	cytosol	45.86	49.31
Os02t0204400-00	Rice	plastid	20.86	26.5
Os06t0661800-01	Rice	plastid	18.14	21.9
Os03t0343400-01	Rice	cytosol, nucleus, peroxisome, plastid	10.0	15.25

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EntrezGene:4336008	ProteinID:BAF14864.1
ncoils:Coil	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C
InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	EnsemblPlantsGene:Os04g0452100	EnsemblPlants:Os04t0452100-02	PFAM:PF00875
PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	UniProt:Q0JCS3	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425
TIGRFAMs:TIGR02766	UniParc:UPI000009E1AF	RefSeq:XP_015636605.1	RefSeq:XP_015636606.1	SEG:seg	:

Description

cryptochrome 1bCryptochrome 1, blue light photoreceptor (Os04t0452100-01);Cryptochrome 1b, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os04t0452100-02)

Coordinates

chr4:+:22549901..22555033

Molecular Weight (calculated)

78945.0 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.420

Length

700 amino acids

Sequence
(BLAST)

001: MSVSSSSMGG GGGGDAGGRT VVWFRRDLRV EDNPALAAAA RAGGEVVPAY VWAPEEDGPY YPGRVSRWWL SQSLKHLDAS LRRLGAGKLV TRRSADAVVA
101: LLQLVRDTGA TRLFFNHLYD PISLVRDHRL KEMMAAEGII VQSFNADLLY EPWEVVDDEG QSFTMFAPFW NRCLSMPYDP AAPLLPPKRI NSGDLSMCPS
201: DDLIFEDDSE RGSNALLARA WSPGWQNADK ALTAFLNGPL IHYSVNRKKA DSASTSLLSP YLHFGELSVR KVFHLVRMKQ LVWSNEGNRA AEESCTLFLR
301: SIGLREYSRY LSFNHPCSHE KPLLAHLRFF PWVINECYFK IWRQGRTGYP LVDAGMRELW ATGWLHDRIR VVVSSFFVKV LQLPWRWGMK YFWDTLLDAD
401: LESDALGWQY ISGSLPDGRE LDRIDNPQLE GYKFDPHGEY VRRWLPELAR LPTEWIHHPW DAPASVLQAA GVELGSNYPL PIVGLDAANA RLQEALSEMW
501: QLEAASRAAM DNGMEEGLGD SSEVPPIEFP RELQMEVDRE PARVTANVLT TARRREDQMV PTMTSSLNRA ETEISADFMN SVDSRAEVPT RVNFEPRTER
601: EENFRTTAGN VARTNGIHEH NNFQQPQHRM RNVLAPSVSE ASSGWTGREG GVVPVWSPPA ASDHSETFAS DEADISSRSY LDRHPQSHRL MNWSQLSQSL

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.