Factsheet for VIT_18s0001g05680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01
VIT_18s0001g05680.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	VIT_12s0059g01420.t01	AT2G32950.1	11509693
AT4G08920.1	VIT_12s0059g01420.t01	AT2G32950.1	11752373
AT4G08920.1	VIT_18s0001g05680.t01	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18908	Soybean	cytosol	83.5	84.73
KRH16735	Soybean	cytosol	83.36	84.58
KRH62344	Soybean	cytosol	82.2	83.41
KRH53063	Soybean	cytosol	82.06	83.14
Solyc04g074180.2.1	Tomato	cytosol	81.62	83.06
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	67.87	80.45
Bra037880.1-P	Field mustard	cytosol	79.02	80.29
Solyc12g057040.1.1	Tomato	mitochondrion	67.44	79.93
AT4G08920.1	Thale cress	cytosol	78.29	79.44
CDX75131	Canola	cytosol	79.45	77.0
CDY54706	Canola	cytosol	79.31	76.86
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	73.66	72.92
Zm00001d015419_P001	Maize	cytosol	17.37	72.73
Zm00001d028434_P001	Maize	cytosol	19.25	72.68
Zm00001d005288_P001	Maize	cytosol	17.95	72.09
Os04t0452100-02	Rice	cytosol	70.91	70.0
Zm00001d015045_P001	Maize	cytosol	18.81	69.52
TraesCS2D01G317500.1	Wheat	cytosol	68.74	68.25
KXG30485	Sorghum	cytosol	69.32	67.75
TraesCS6D01G187200.1	Wheat	cytosol	68.31	67.62
Zm00001d003477_P001	Maize	cytosol	67.29	67.59
Os02t0573200-01	Rice	cytosol	70.19	67.55
TraesCS6A01G203300.1	Wheat	cytosol	68.16	67.48
Zm00001d016915_P002	Maize	cytosol, plastid	68.74	67.19
TraesCS2A01G340000.1	Wheat	cytosol	68.89	66.85
KXG26438	Sorghum	cytosol	68.45	66.62
TraesCS2B01G337900.1	Wheat	cytosol	68.45	66.43
Zm00001d050850_P001	Maize	cytosol	67.73	66.2
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	67.87	65.69
TraesCS6B01G224100.2	Wheat	cytosol	64.54	65.2
HORVU2Hr1G079220.2	Barley	cytosol	67.15	65.17
VIT_05s0049g00960.t01	Wine grape	cytosol	50.8	54.33
VIT_09s0002g05990.t01	Wine grape	mitochondrion	22.43	28.81
VIT_04s0008g02670.t01	Wine grape	plastid	18.38	21.67
VIT_07s0005g00590.t01	Wine grape	cytosol	9.26	14.1

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100254022	wikigene:100254022	MapMan:26.1.2.1.1	Gene3D:3.40.50.620
ProteinID:ABX79355	ProteinID:ABX79355.1	ProteinID:CBI19162	ProteinID:CBI19162.3	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf
InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1	InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N
UniProt:E0CRK8	EMBL:EU188919	EMBL:FN595227	GO:GO:0003674	GO:GO:0004871	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729	EntrezGene:LOC100254022	wikigene:LOC100254022	PFAM:PF00875
PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147	ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645
PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766
UniParc:UPI0001BE14F8	ArrayExpress:VIT_18s0001g05680	EnsemblPlantsGene:VIT_18s0001g05680	EnsemblPlants:VIT_18s0001g05680.t01	RefSeq:XP_002285792	RefSeq:XP_002285792.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:4433417..4440032

Molecular Weight (calculated)

77905.3 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.478

Length

691 amino acids

Sequence
(BLAST)

001: MSGGGCSIVW FRRDLRVEDN PALAAGVRAG AVIPVFIWAP EEEGPYYPGR VSRWWLKQSL AHLDSSLRSL GTPLITKRST DCVSSLLEIV KSTGATLLFF
101: NHLYDPLSLV RDHRAKEALT AQGIAVHSFN ADLLYEPWDV NDAQGHSFTT FSAFWDRCLS MPYDPEAPLL PPKRINPGDV SRCPSDTIAF EDESEKGSNA
201: LLARAWTPGW SNADKALTIF INGPLIEYSK NSRKADSATT SFLSPHLHFG EVSVRKVFHL VRIKQVLWAN EGNKAGEESV NLFLKSIGLR EYSRYLSFNH
301: PYSHERPLLG HLKFFPWVVD EGYFKAWRQG RTGYPLVDAG MRELWATGWM HDRIRVVVSS FFVKVLQLPW RWGMKYFWDT LLDADLESDA LGWQYISGTL
401: PDGREFDRID NPQFEGYKFD PNGEYVRRWL PELARLPTEW IHHPWNAPES VLQAAGIELG SNYPLPIVEI DAAKARLQEA LSEMWQAVAA SRAAIENGTE
501: EGLGDSESAP IAFPQDVQME EIPEPVRNNP TTTAVRRYED QMVPSMTSSF LRIEGEPSLD IQNSAENSRA EVPTNVNANQ EPRRETLNRG VTHSVRSNNH
601: NLPQFNIMIG RNTAEDSTAE SSSTTRRERD GGVVPVWSPS TSSYAEQFVS EENGIGTSSS YLQRHPRSHQ LMNWKQLSQT GYKNLGRGES D

Best Arabidopsis Sequence Match ( AT4G08920.1 )
(BLAST)

001: MSGSVSGCGS GGCSIVWFRR DLRVEDNPAL AAAVRAGPVI ALFVWAPEEE GHYHPGRVSR WWLKNSLAQL DSSLRSLGTC LITKRSTDSV ASLLDVVKST
101: GASQIFFNHL YDPLSLVRDH RAKDVLTAQG IAVRSFNADL LYEPWEVTDE LGRPFSMFAA FWERCLSMPY DPESPLLPPK KIISGDVSKC VADPLVFEDD
201: SEKGSNALLA RAWSPGWSNG DKALTTFING PLLEYSKNRR KADSATTSFL SPHLHFGEVS VRKVFHLVRI KQVAWANEGN EAGEESVNLF LKSIGLREYS
301: RYISFNHPYS HERPLLGHLK FFPWAVDENY FKAWRQGRTG YPLVDAGMRE LWATGWLHDR IRVVVSSFFV KVLQLPWRWG MKYFWDTLLD ADLESDALGW
401: QYITGTLPDS REFDRIDNPQ FEGYKFDPNG EYVRRWLPEL SRLPTDWIHH PWNAPESVLQ AAGIELGSNY PLPIVGLDEA KARLHEALSQ MWQLEAASRA
501: AIENGSEEGL GDSAEVEEAP IEFPRDITME ETEPTRLNPN RRYEDQMVPS ITSSLIRPEE DEESSLNLRN SVGDSRAEVP RNMVNTNQAQ QRRAEPASNQ
601: VTAMIPEFNI RIVAESTEDS TAESSSSGRR ERSGGIVPEW SPGYSEQFPS EENGIGGGST TSSYLQNHHE ILNWRRLSQT G

Arabidopsis Description

CRY1Cryptochrome-1 [Source:UniProtKB/Swiss-Prot;Acc:Q43125]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.