Factsheet for Zm00001d028434_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003477_P001
Zm00001d005288_P001
Zm00001d015045_P001
Zm00001d015419_P001
Zm00001d016915_P002
Zm00001d018207_P001
Zm00001d028434_P001
Zm00001d050850_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11509693
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11509693
AT4G08920.1	Zm00001d018207_P001	AT2G32950.1	11752373
AT4G08920.1	Zm00001d052138_P004	AT2G32950.1	11752373
AT4G08920.1	Zm00001d003477_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d005288_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015045_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d015419_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d016915_P002	AT4G08920.1	15805487
AT4G08920.1	Zm00001d028434_P001	AT4G08920.1	15805487
AT4G08920.1	Zm00001d050850_P001	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015419_P001	Maize	cytosol	82.51	91.52
Zm00001d005288_P001	Maize	cytosol	81.42	86.63
Zm00001d015045_P001	Maize	cytosol	72.13	70.59
Zm00001d016915_P002	Maize	cytosol, plastid	92.9	24.05
KXG30485	Sorghum	cytosol	92.35	23.9
Zm00001d050850_P001	Maize	cytosol	86.34	22.35
Zm00001d003477_P001	Maize	cytosol	82.51	21.95
Os02t0573200-01	Rice	cytosol	85.79	21.87
TraesCS6D01G187200.1	Wheat	cytosol	81.97	21.49
TraesCS6A01G203300.1	Wheat	cytosol	81.42	21.35
TraesCS6B01G224100.2	Wheat	cytosol	79.78	21.34
Solyc12g057040.1.1	Tomato	mitochondrion	67.21	21.1
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	66.67	20.93
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	80.87	20.73
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	76.5	20.06
Solyc04g074180.2.1	Tomato	cytosol	73.77	19.88
KRH18908	Soybean	cytosol	72.68	19.53
KRH16735	Soybean	cytosol	72.68	19.53
KRH53063	Soybean	cytosol	72.13	19.35
VIT_18s0001g05680.t01	Wine grape	cytosol	72.68	19.25
KRH62344	Soybean	cytosol	71.58	19.24
Bra037880.1-P	Field mustard	cytosol	70.49	18.97
AT4G08920.1	Thale cress	cytosol	70.49	18.94
CDY54706	Canola	cytosol	70.49	18.09
CDX75131	Canola	cytosol	70.49	18.09
Zm00001d045944_P007	Maize	cytosol	43.17	12.08
Zm00001d015724_P001	Maize	plastid	12.57	6.32
Zm00001d047501_P001	Maize	plastid	14.75	6.05
Zm00001d029105_P001	Maize	plastid	13.66	5.61
Zm00001d046935_P001	Maize	plastid	8.74	2.96

Protein Annotations

EnsemblPlants:Zm00001d028434_P001	EnsemblPlants:Zm00001d028434_T001	EnsemblPlantsGene:Zm00001d028434	Gene3D:1.25.40.80	InterPro:Crypto/Photolyase_FAD-like_sf	PANTHER:PTHR11455
PANTHER:PTHR11455:SF44	ProteinID:ONL96013.1	SUPFAM:SSF48173	UniParc:UPI00084242DB	UniProt:A0A1D6JW68	MapMan:26.1.2.1.1

Description

Cryptochrome-1

Coordinates

chr1:+:34926403..34927063

Molecular Weight (calculated)

21201.5 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.216

Length

183 amino acids

Sequence
(BLAST)

001: MFWNRCLCMP DPAAPLLPPK RINSGDLSRC PWDELVFEDE SERGSNALLA RAWSPGWQNA DKALTAFLNG PLMDHSVNRK KADSASTSLL SPYLHFGELS
101: VRKVFHQVRM KRLMWSNDDN HAGEESCTLF LCSIGLREYL RYLTFNHPYS HEKPLLSHLR FFPWVVNEVY IIKVLVIYLY LAQ

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.