CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14801
KRH16735
KRH18908
KRH53063
KRH62344
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08920.1	KRH14801	AT2G32950.1	11509693
AT4G08920.1	KRH73341	AT2G32950.1	11509693
AT4G08920.1	KRH14801	AT2G32950.1	11752373
AT4G08920.1	KRH73341	AT2G32950.1	11752373
AT4G08920.1	KRH16735	AT4G08920.1	15805487
AT4G08920.1	KRH18908	AT4G08920.1	15805487
AT4G08920.1	KRH53063	AT4G08920.1	15805487
AT4G08920.1	KRH62344	AT4G08920.1	15805487

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62344	Soybean	cytosol	96.63	96.77
KRH18908	Soybean	cytosol	86.8	86.93
KRH16735	Soybean	cytosol	86.8	86.93
VIT_18s0001g05680.t01	Wine grape	cytosol	83.14	82.06
Solyc04g074180.2.1	Tomato	cytosol	80.06	80.41
PGSC0003DMT400022039	Potato	cytosol, mitochondrion, plastid	67.45	78.9
Solyc12g057040.1.1	Tomato	mitochondrion	67.16	78.56
AT4G08920.1	Thale cress	cytosol	78.01	78.12
Bra037880.1-P	Field mustard	cytosol	77.71	77.94
CDX75131	Canola	cytosol	78.15	74.75
CDY54706	Canola	cytosol	77.71	74.33
Zm00001d015045_P001	Maize	cytosol	19.94	72.73
Zm00001d028434_P001	Maize	cytosol	19.35	72.13
Zm00001d015419_P001	Maize	cytosol	17.3	71.52
Zm00001d005288_P001	Maize	cytosol	18.04	71.51
GSMUA_Achr6P02100_001	Banana	cytosol, plastid	73.02	71.35
Os04t0452100-02	Rice	cytosol	69.65	67.86
TraesCS6D01G187200.1	Wheat	cytosol	68.48	66.91
TraesCS2D01G317500.1	Wheat	cytosol	68.18	66.81
TraesCS6A01G203300.1	Wheat	cytosol	68.33	66.76
Zm00001d003477_P001	Maize	cytosol	67.16	66.57
KXG30485	Sorghum	cytosol	68.77	66.34
Zm00001d016915_P002	Maize	cytosol, plastid	68.18	65.77
TraesCS2A01G340000.1	Wheat	cytosol	68.33	65.45
KXG26438	Sorghum	cytosol	68.04	65.35
Os02t0573200-01	Rice	cytosol	68.77	65.32
TraesCS2B01G337900.1	Wheat	cytosol	68.18	65.31
HORVU6Hr1G049950.12	Barley	cytosol, mitochondrion	67.89	64.85
Zm00001d050850_P001	Maize	cytosol	67.16	64.78
TraesCS6B01G224100.2	Wheat	cytosol	64.81	64.62
HORVU2Hr1G079220.2	Barley	cytosol	66.72	63.9
KRG92422	Soybean	cytosol	51.61	55.52
KRH69122	Soybean	cytosol	48.53	55.17
KRH13218	Soybean	extracellular	6.74	54.76
KRH34384	Soybean	cytosol	51.03	54.21
KRH44412	Soybean	mitochondrion, plastid	21.26	25.75
KRH61917	Soybean	plastid	18.04	21.06
KRH31864	Soybean	cytosol, nucleus, plastid, vacuole	9.68	15.0
KRH69286	Soybean	plastid	9.82	14.41

Protein Annotations

Gene3D:1.10.579.10	Gene3D:1.25.40.80	EntrezGene:100797839	MapMan:26.1.2.1.1	Gene3D:3.40.50.620	EMBL:AB498929
EMBL:AB498930	EMBL:ACUP02003448	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Crypto/Photolyase_N_sf	InterPro:Cryptochr/Photolyase_FAD-bd	InterPro:Cryptochrome/DNA_photolyase_1
InterPro:Cryptochrome_C	InterPro:Cryptochrome_pln	UniProt:D0FZ12	InterPro:DNA_photolyase_1_CS_C	InterPro:DNA_photolyase_N	EnsemblPlantsGene:GLYMA_06G103200
GO:GO:0003674	GO:GO:0004871	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009785	GO:GO:0009882	GO:GO:0009987	GO:GO:0038023	InterPro:IPR006050	InterPro:IPR014729
ProteinID:KRH53061.1	ProteinID:KRH53062.1	EnsemblPlants:KRH53063	ProteinID:KRH53063	ProteinID:KRH53063.1	ProteinID:KRH53064.1
ProteinID:KRH53065.1	ProteinID:KRH53066.1	PFAM:PF00875	PFAM:PF03441	PFAM:PF12546	PRINTS:PR00147
ScanProsite:PS00394	ScanProsite:PS00691	PFscan:PS51645	PANTHER:PTHR11455	PANTHER:PTHR11455:SF44	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF48173	SUPFAM:SSF52425	TIGRFAMs:TIGR02766	UniParc:UPI0001BAC472	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:8205073..8210842

Molecular Weight (calculated)

77045.4 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.494

Length

682 amino acids

Sequence
(BLAST)

001: MSGGGCSSIV WFRRDLRIED NPALTAGVRA GAVVAVFIWA PEEEGQYYPG RVSRWWLKNS LAHLDSSLRN LGTPLITKRS TDTLSSLFEV VKSTGATQLF
101: FNHLYDPLSL VRDHRAKEVL TAQGITVRSF NADLLYEPWD VNDAHGRPFT TFAAFWERCL SMPYDPESPL LPPKRIIPGD ASRCPSDTLL FEDELEKASN
201: ALLARAWSPG WSNANKALTT FINGPLIEYS KNRRKADSAT TSLLSPHLHF GELSVKKVFH LVRIKQVLWA NEGNKAGEES VNLFLKSIGL REYSRYISFN
301: HPYSHERPLL GHLKFFPWVV NEGYFKAWRQ GRTGYPLVDA GMRELWATGW LHDRIRVVVS SFFVKVLQLP WRWGMKYFWD TLLDADLESD ALGWQYISGS
401: LPDGREIDRI DNPQFEGYKF DPNGEYVRRW LPELSRLPTE WIHHPWNAPE SVLQAAGIEL GSNYPLPIVG IDAAKNRLLE ALSKMWQQEA ASRAAMENGT
501: EEGLGDSSES VPAAFPQDTR MEETHEPVRN NPLPIARRYQ DQMVPSITSS LLRVEEEETS SDLRNSAEES SRAEVPVTAN AQQNAGVALN ERMLQTTNRN
601: TQTQYNTTMD LRNVADDSAV ESSSGTRRER DGGLVPVWSP PASSYSEQFV GDENGITSSS SYLQRHPQSH QMLNWKQLPQ TG

Best Arabidopsis Sequence Match ( AT1G04400.1 )
(BLAST)

001: MKMDKKTIVW FRRDLRIEDN PALAAAAHEG SVFPVFIWCP EEEGQFYPGR ASRWWMKQSL AHLSQSLKAL GSDLTLIKTH NTISAILDCI RVTGATKVVF
101: NHLYDPVSLV RDHTVKEKLV ERGISVQSYN GDLLYEPWEI YCEKGKPFTS FNSYWKKCLD MSIESVMLPP PWRLMPITAA AEAIWACSIE ELGLENEAEK
201: PSNALLTRAW SPGWSNADKL LNEFIEKQLI DYAKNSKKVV GNSTSLLSPY LHFGEISVRH VFQCARMKQI IWARDKNSEG EESADLFLRG IGLREYSRYI
301: CFNFPFTHEQ SLLSHLRFFP WDADVDKFKA WRQGRTGYPL VDAGMRELWA TGWMHNRIRV IVSSFAVKFL LLPWKWGMKY FWDTLLDADL ECDILGWQYI
401: SGSIPDGHEL DRLDNPALQG AKYDPEGEYI RQWLPELARL PTEWIHHPWD APLTVLKASG VELGTNYAKP IVDIDTAREL LAKAISRTRE AQIMIGAAPD
501: EIVADSFEAL GANTIKEPGL CPSVSSNDQQ VPSAVRYNGS KRVKPEEEEE RDMKKSRGFD ERELFSTAES SSSSSVFFVS QSCSLASEGK NLEGIQDSSD
601: QITTSLGKNG CK

Arabidopsis Description

CRY2Cryptochrome-2 [Source:UniProtKB/Swiss-Prot;Acc:Q96524]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.