Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73341 | Soybean | nucleus | 95.56 | 96.41 |
| AT2G32950.1 | Thale cress | nucleus | 78.07 | 78.07 |
| Bra005541.1-P | Field mustard | nucleus | 76.44 | 77.13 |
| CDY52540 | Canola | nucleus | 77.19 | 76.96 |
| CDY12145 | Canola | nucleus | 76.89 | 76.78 |
| Solyc12g005950.1.1 | Tomato | nucleus | 75.26 | 75.04 |
| PGSC0003DMT400036075 | Potato | nucleus | 72.15 | 74.58 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 74.37 | 74.26 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 72.0 | 71.89 |
| Zm00001d052138_P004 | Maize | nucleus | 70.67 | 69.53 |
| Os02t0771100-01 | Rice | nucleus | 70.37 | 69.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.33 | 69.01 |
| Zm00001d018207_P001 | Maize | nucleus | 70.81 | 68.98 |
| KXG31183 | Sorghum | nucleus, plastid | 70.81 | 68.78 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 69.04 | 67.24 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 69.33 | 66.95 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 68.74 | 66.29 |
| KRH55271 | Soybean | cytosol | 6.81 | 36.22 |
| KRH25904 | Soybean | mitochondrion | 5.63 | 34.23 |
| KRH26155 | Soybean | cytosol | 30.81 | 26.4 |
| KRH55275 | Soybean | cytosol | 30.96 | 26.0 |
| KRH22086 | Soybean | plastid | 33.78 | 25.17 |
| KRH27246 | Soybean | plastid | 33.78 | 25.14 |
| KRH60015 | Soybean | plasma membrane | 30.67 | 24.67 |
| KRH41290 | Soybean | nucleus | 30.96 | 20.21 |
| KRH06512 | Soybean | nucleus | 30.22 | 19.94 |
| KRH47949 | Soybean | nucleus | 30.07 | 19.61 |
| KRH77627 | Soybean | nucleus | 31.7 | 18.95 |
| KRH27856 | Soybean | nucleus | 31.11 | 18.7 |
Protein Annotations
| EntrezGene:100788171 | MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 |
| EMBL:ACUP02008527 | ncoils:Coil | EnsemblPlantsGene:GLYMA_14G049700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1M7I6 | InterPro:IPR001680 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH14801 | ProteinID:KRH14801 | ProteinID:KRH14801.1 |
| PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50089 |
| PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00184 | SMART:SM00320 | SUPFAM:SSF50978 |
| SUPFAM:SSF57850 | UniParc:UPI000233AE65 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr14:-:3880413..3888915
Molecular Weight (calculated)
75638.5 Da
IEP (calculated)
7.636
GRAVY (calculated)
-0.422
Length
675 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELSAGPLV PAVVKPEASK GAAVAADTSA AASGGTFPAS TSEPDKDFLC PICMQIIKDA FLTACGHSFC YMCIITHLRN KSDCPCCGHY LTNTNLFPNF
101: LLDKLLKKTS ARQISKTASP VEHFRQALQK GCDVSIKELD TLLSLLAEKK RKMEQEEAER NMQILLDFLH CLRKQKVDEL KEVQTDLQFI KEDINAVEKH
201: RMDLYRARDR YSVKLRMLDD SGGRKSWHSS MDKNNSGLIS SPLNLRGGLS SGSHTKKNDG KSQISSHGHG VQRRDAITGS DSQYINQSGL SLVRKKRVHT
301: QFNDLQECYL QKRRHAADRP HSQQVRDINL ISREGYTAGL EDFQSVLTTF TRYSRLRVIA ELRHGDIFHS ANIVSSIEFD CDDDLFATAG VSRRIKVFDF
401: SAVVNEPTDA HCPVVEMSTR SKLSCLSWNK YAKNQIASSD YEGIVTVWDV TTRKSLMEYE EHEKRAWSVD FSRTDPSMLV SGSDDCKVKI WCTNQEASVL
501: NIDMKANICC VKYNPGSGNY IAVGSADHHI HYYDLRNISR PVHVFSGHRK AVSYVKFLSN DELASASTDS TLRLWDVKEN LPVRTFKGHA NEKNFVGLTV
601: SSEYIACGSE TNEVFVYHKE ISRPLTCHRF GSPDMDDAED EAGSYFISAV CWKSDRPTIL TANSQGTIKV LVLAA
101: LLDKLLKKTS ARQISKTASP VEHFRQALQK GCDVSIKELD TLLSLLAEKK RKMEQEEAER NMQILLDFLH CLRKQKVDEL KEVQTDLQFI KEDINAVEKH
201: RMDLYRARDR YSVKLRMLDD SGGRKSWHSS MDKNNSGLIS SPLNLRGGLS SGSHTKKNDG KSQISSHGHG VQRRDAITGS DSQYINQSGL SLVRKKRVHT
301: QFNDLQECYL QKRRHAADRP HSQQVRDINL ISREGYTAGL EDFQSVLTTF TRYSRLRVIA ELRHGDIFHS ANIVSSIEFD CDDDLFATAG VSRRIKVFDF
401: SAVVNEPTDA HCPVVEMSTR SKLSCLSWNK YAKNQIASSD YEGIVTVWDV TTRKSLMEYE EHEKRAWSVD FSRTDPSMLV SGSDDCKVKI WCTNQEASVL
501: NIDMKANICC VKYNPGSGNY IAVGSADHHI HYYDLRNISR PVHVFSGHRK AVSYVKFLSN DELASASTDS TLRLWDVKEN LPVRTFKGHA NEKNFVGLTV
601: SSEYIACGSE TNEVFVYHKE ISRPLTCHRF GSPDMDDAED EAGSYFISAV CWKSDRPTIL TANSQGTIKV LVLAA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.