Factsheet for AT2G32950.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52540	Canola	nucleus	94.67	94.39
Bra005541.1-P	Field mustard	nucleus	93.48	94.32
CDY12145	Canola	nucleus	94.22	94.08
KRH14801	Soybean	nucleus	78.07	78.07
KRH73341	Soybean	nucleus	76.89	77.58
Solyc12g005950.1.1	Tomato	nucleus	77.04	76.81
PGSC0003DMT400036075	Potato	nucleus	73.93	76.42
VIT_12s0059g01420.t01	Wine grape	nucleus	74.67	74.56
GSMUA_Achr3P20130_001	Banana	nucleus	71.11	71.01
Zm00001d052138_P004	Maize	nucleus	70.96	69.83
Os02t0771100-01	Rice	nucleus	70.52	69.49
GSMUA_AchrUn_...	Banana	nucleus	65.78	69.48
Zm00001d018207_P001	Maize	nucleus	70.96	69.12
KXG31183	Sorghum	nucleus, plastid	71.11	69.06
TraesCS6B01G356400.1	Wheat	nucleus	69.63	67.82
TraesCS6A01G326100.1	Wheat	nucleus	69.93	67.43
TraesCS6D01G305800.1	Wheat	nucleus	69.78	67.38
AT5G23730.1	Thale cress	nucleus	16.59	30.43
AT5G52250.1	Thale cress	cytosol, plastid	16.0	28.05
AT1G53090.1	Thale cress	nucleus	30.22	25.69
AT3G15354.3	Thale cress	nucleus	31.26	24.97
AT2G46340.2	Thale cress	nucleus	30.96	20.31
AT4G11110.1	Thale cress	nucleus	30.37	19.79

Protein Annotations

MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10	PDB:5IGO
PDB:5KWN	EntrezGene:817857	UniProt:A0A178VXE2	ProteinID:AAB91983.1	ProteinID:AEC08766.1	ArrayExpress:AT2G32950
EnsemblPlantsGene:AT2G32950	RefSeq:AT2G32950	TAIR:AT2G32950	RefSeq:AT2G32950-TAIR-G	EnsemblPlants:AT2G32950.1	TAIR:AT2G32950.1
EMBL:BT025337	ProteinID:CAA04168.1	ProteinID:CAA04169.1	Symbol:COP1	ncoils:Coil	GO:GO:0000003
GO:GO:0000152	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009640	GO:GO:0009641	GO:GO:0009647	GO:GO:0009649	GO:GO:0009791
GO:GO:0009987	GO:GO:0010017	GO:GO:0010119	GO:GO:0016567	GO:GO:0016604	GO:GO:0016740
GO:GO:0019538	GO:GO:0042802	GO:GO:0046283	GO:GO:0046872	GO:GO:0048573	GO:GO:0061630
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986
EMBL:L24437	RefSeq:NP_180854.1	ProteinID:OAP10504.1	UniProt:P43254	PFAM:PF00400	PFAM:PF13923
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	ScanProsite:PS00518	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50089	PFscan:PS50294
PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF57850
UniParc:UPI0000127EC1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:	:

Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]

Coordinates

chr2:+:13977881..13983609

Molecular Weight (calculated)

76191.7 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.556

Length

675 amino acids

Sequence
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.