Factsheet for AT1G53090.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50512	Canola	nucleus	80.86	86.99
Bra038098.1-P	Field mustard	nucleus	34.01	83.08
CDY25880	Canola	nucleus	47.73	82.21
AT3G15354.3	Thale cress	nucleus	78.21	73.49
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	6.8	70.13
KRH55271	Soybean	cytosol	10.33	64.57
Solyc07g063120.2.1	Tomato	cytosol	63.35	60.6
KRH26155	Soybean	cytosol	58.31	58.76
Solyc12g013840.1.1	Tomato	nucleus	63.35	58.35
KRH55275	Soybean	cytosol	58.82	58.08
VIT_19s0014g02660.t01	Wine grape	nucleus	66.62	58.0
PGSC0003DMT400039600	Potato	cytosol	63.1	57.72
KRH27246	Soybean	plastid	65.24	57.11
KRH22086	Soybean	plastid	64.48	56.51
GSMUA_Achr3P31750_001	Banana	nucleus	54.03	55.86
TraesCS3D01G284500.2	Wheat	cytosol	54.03	55.71
TraesCS3B01G318600.1	Wheat	cytosol	53.9	55.66
TraesCS3A01G284700.2	Wheat	cytosol	54.03	55.35
OQU87453	Sorghum	cytosol	53.53	55.34
Zm00001d043592_P004	Maize	cytosol	54.53	54.74
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	52.52	54.58
Zm00001d011746_P002	Maize	nucleus	54.03	53.69
GSMUA_Achr1P13700_001	Banana	nucleus	50.25	51.82
Os01t0725800-01	Rice	nucleus	38.92	49.2
AT5G23730.1	Thale cress	nucleus	15.11	32.61
AT5G52250.1	Thale cress	cytosol, plastid	15.24	31.43
AT2G32950.1	Thale cress	nucleus	25.69	30.22
AT4G11110.1	Thale cress	nucleus	38.66	29.63
AT2G46340.2	Thale cress	nucleus	37.91	29.25

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	EntrezGene:841743
UniProt:A0A178WBA0	ProteinID:AAF87859.1	ProteinID:AEE32888.1	ProteinID:AEE32889.1	ProteinID:ANM59146.1	ArrayExpress:AT1G53090
EnsemblPlantsGene:AT1G53090	RefSeq:AT1G53090	TAIR:AT1G53090	RefSeq:AT1G53090-TAIR-G	EnsemblPlants:AT1G53090.1	TAIR:AT1G53090.1
EMBL:AY040023	EMBL:AY133883	Unigene:At.21898	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009637	GO:GO:0009987	GO:GO:0010017	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0042802	GO:GO:0080008	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:Kinase-like_dom_sf	RefSeq:NP_001321533.1	RefSeq:NP_175717.1	RefSeq:NP_849802.1	ProteinID:OAP15719.1
PFAM:PF00400	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007095	PO:PO:0007098
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020100
PO:PO:0025022	PO:PO:0025281	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	UniProt:Q94BM7	SMART:SM00220
SMART:SM00320	Symbol:SPA4	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI00000A8982	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]

Coordinates

chr1:+:19783185..19786902

Molecular Weight (calculated)

89076.0 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.386

Length

794 amino acids

Sequence
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.