Factsheet for TraesCS3B01G318600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G284700.2
TraesCS3B01G318600.1
TraesCS3D01G284500.2
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	TraesCS3A01G284700.2	AT1G53090.1	18812498
AT1G53090.1	TraesCS3B01G318600.1	AT1G53090.1	18812498
AT1G53090.1	TraesCS3D01G284500.2	AT1G53090.1	18812498
AT1G53090.1	TraesCS6A01G326100.1	AT2G32950.1	12887588
AT1G53090.1	TraesCS6B01G356400.1	AT2G32950.1	12887588
AT1G53090.1	TraesCS6D01G305800.1	AT2G32950.1	12887588
AT1G53090.1	TraesCS6A01G326100.1	AT2G32950.1	18812498
AT1G53090.1	TraesCS6B01G356400.1	AT2G32950.1	18812498
AT1G53090.1	TraesCS6D01G305800.1	AT2G32950.1	18812498
AT1G53090.1	TraesCS6A01G326100.1	AT2G32950.1	21798944
AT1G53090.1	TraesCS6B01G356400.1	AT2G32950.1	21798944
AT1G53090.1	TraesCS6D01G305800.1	AT2G32950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G284500.2	Wheat	cytosol	99.61	99.48
TraesCS3A01G284700.2	Wheat	cytosol	98.7	97.94
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	93.24	93.85
OQU87453	Sorghum	cytosol	85.96	86.07
Zm00001d043592_P004	Maize	cytosol	88.17	85.71
Zm00001d011746_P002	Maize	nucleus	86.22	82.98
Os01t0725800-01	Rice	nucleus	66.71	81.69
GSMUA_Achr3P31750_001	Banana	nucleus	61.38	61.46
KRH55271	Soybean	cytosol	9.62	58.27
CDY50512	Canola	nucleus	53.84	56.1
GSMUA_Achr1P13700_001	Banana	nucleus	55.14	55.06
Solyc07g063120.2.1	Tomato	cytosol	59.17	54.82
Bra021100.1-P	Field mustard	nucleus	55.01	54.23
CDY20122	Canola	nucleus	55.27	53.93
AT1G53090.1	Thale cress	nucleus	55.66	53.9
CDX98548	Canola	nucleus, plastid	55.53	53.78
Bra027259.1-P	Field mustard	nucleus, plastid	55.53	53.78
CDX97654	Canola	nucleus, plastid	55.53	53.71
CDY21834	Canola	nucleus, plastid	54.75	53.22
KRH26155	Soybean	cytosol	53.45	52.16
Bra038098.1-P	Field mustard	nucleus	21.98	52.0
AT3G15354.3	Thale cress	nucleus	57.09	51.95
KRH55275	Soybean	cytosol	53.71	51.37
Solyc12g013840.1.1	Tomato	nucleus	57.48	51.28
VIT_12s0028g03570.t01	Wine grape	cytosol	59.17	50.95
PGSC0003DMT400039600	Potato	cytosol	57.48	50.92
VIT_19s0014g02660.t01	Wine grape	nucleus	59.95	50.55
KRH27246	Soybean	plastid	58.65	49.72
KRH22086	Soybean	plastid	58.0	49.23
CDY25880	Canola	nucleus	28.35	47.29
TraesCS6B01G356400.1	Wheat	nucleus	28.74	31.89
TraesCS6B01G054100.1	Wheat	plastid	12.87	24.15

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	EnsemblPlantsGene:TraesCS3B01G318600	EnsemblPlants:TraesCS3B01G318600.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr3B:-:513566862..513572044

Molecular Weight (calculated)

85217.2 Da

IEP (calculated)

5.398

GRAVY (calculated)

-0.372

Length

769 amino acids

Sequence
(BLAST)

001: MEVSRGGAAA GGGARRGEEE GGEVSLREWL DRPGRAVEAP ECLHVFRQVA EAVADAHAQG VAVGSARPSC FVVSPPFSRV AFIESASGSD ASGSDASEDA
101: DHDAEPPRRG HGAGRGGEER GEKGFPLKSV LAMELNWYTS PEEADDSGGG ATFASDVYRL GVLMFELFCS FETLEEKMRA MANLRYRVLP PQLLLKWPKE
201: ASFCQLMMHP VPDTRPKMSE VLQSEFLNQS RNSLEEREAA LRLREEIEEQ ELLLDFLLQL QKRKQDIADN LQDTVAFLSS DINEVLHRQS ALGQCGNFSI
301: ELDKEVSSGT VEDQSDCGSR KRFRPELHAV DMEEHSRSLE ECSRTVPSSV VIQESVLSKS SRLMKNFKKL ETAYFLARSK LARQVGNPLR SCDQVVKRTT
401: GSAVGTEGSS IDDFALEGHS GRRQGGWMNS FLEGLCRYLS FSQLKVRAEL KQCDLLNSSN LVCSVGFDRD NEFFATAGVN KKIKVFEYNM IVNEHRDIHY
501: PVVEMSNKSK LSCISWNSYM KSHIASSDFD GLVQVWDVTR SQVFVEMREH ERRVWSVDFS LADPTKLVSG SDDGTVKLWS MNQAGSVGTI RTRANVCSVQ
601: FQPDSARSIA IGSADHKIYC YDLRNIRAPY CTLVGHTKTV SYVKYVDAST IVSGSTDNSL KLWDLSTNQA RVIDNPVQTF TGHTNTKNFV GLSISDGYIA
701: TGSETNEVFV YHKAFPMPVL AYKFNVTDPI SGQEIDDQSQ FISCVCWRGQ SSTLLSANSS GNIKVLEMD

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.