CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69493
CDX85529
CDX90969
CDY12145
CDY25880
CDY26470
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	CDY25880	AT1G53090.1	18812498
AT1G53090.1	CDY50512	AT1G53090.1	18812498
AT1G53090.1	CDY12145	AT2G32950.1	12887588
AT1G53090.1	CDY52540	AT2G32950.1	12887588
AT1G53090.1	CDY12145	AT2G32950.1	18812498
AT1G53090.1	CDY52540	AT2G32950.1	18812498
AT1G53090.1	CDY12145	AT2G32950.1	21798944
AT1G53090.1	CDY52540	AT2G32950.1	21798944
AT1G53090.1	CDX69493	AT5G15850.1	16854975
AT1G53090.1	CDX85529	AT5G15850.1	16854975
AT1G53090.1	CDX90969	AT5G15850.1	16854975
AT1G53090.1	CDY26470	AT5G15850.1	16854975
AT1G53090.1	CDX69493	AT5G15850.1	18812498
AT1G53090.1	CDX85529	AT5G15850.1	18812498
AT1G53090.1	CDX90969	AT5G15850.1	18812498
AT1G53090.1	CDY26470	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25880	Canola	nucleus	59.21	94.79
AT1G53090.1	Thale cress	nucleus	86.99	80.86
CDX97654	Canola	nucleus, plastid	75.75	70.31
CDX98548	Canola	nucleus, plastid	75.2	69.9
CDY20122	Canola	nucleus	74.25	69.54
CDY21834	Canola	nucleus, plastid	74.39	69.41
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	7.18	68.83
KRH55271	Soybean	cytosol	10.98	63.78
Solyc07g063120.2.1	Tomato	cytosol	65.18	57.95
KRH26155	Soybean	cytosol	60.16	56.35
VIT_19s0014g02660.t01	Wine grape	nucleus	69.11	55.92
Solyc12g013840.1.1	Tomato	nucleus	65.18	55.8
KRH27246	Soybean	plastid	68.43	55.68
KRH55275	Soybean	cytosol	60.43	55.47
PGSC0003DMT400039600	Potato	cytosol	65.04	55.3
KRH22086	Soybean	plastid	67.89	55.3
TraesCS3D01G284500.2	Wheat	cytosol	56.23	53.9
TraesCS3B01G318600.1	Wheat	cytosol	56.1	53.84
GSMUA_Achr3P31750_001	Banana	nucleus	55.96	53.78
TraesCS3A01G284700.2	Wheat	cytosol	56.37	53.68
OQU87453	Sorghum	cytosol	55.69	53.52
Zm00001d043592_P004	Maize	cytosol	56.91	53.1
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	54.61	52.75
Zm00001d011746_P002	Maize	nucleus	56.78	52.44
GSMUA_Achr1P13700_001	Banana	nucleus	52.98	50.78
Os01t0725800-01	Rice	nucleus	40.24	47.29
CDY19171	Canola	cytosol	15.99	46.83
CDX79494	Canola	cytosol	5.56	39.81
CDY32590	Canola	cytosol	16.4	34.18
CDY38909	Canola	cytosol	16.26	34.09
CDY16865	Canola	nucleus	16.67	33.15
CDX83371	Canola	nucleus	39.7	32.81
CDX87159	Canola	cytosol	16.4	32.7
CDX95691	Canola	nucleus	39.02	31.51
CDY12145	Canola	nucleus	28.32	30.92
CDY52540	Canola	nucleus	28.18	30.72
CDY42035	Canola	nucleus	40.38	30.32
CDX86817	Canola	nucleus	39.7	30.24
CDY40851	Canola	nucleus	40.11	30.11
CDX80009	Canola	nucleus	39.97	29.8

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	GO:A0A078IKV3	UniProt:A0A078IKV3
EnsemblPlants:CDY50512	ProteinID:CDY50512	ProteinID:CDY50512.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00096918001	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0004EE5E69	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC06g10100DBnaC06g10100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKV3]

Coordinates

chrLK032919:+:50541..53708

Molecular Weight (calculated)

82701.7 Da

IEP (calculated)

5.706

GRAVY (calculated)

-0.350

Length

738 amino acids

Sequence
(BLAST)

001: MEGSSESNSR GLNTSGVSEF LPAERDRSKS FLSHIGYVRS LLGSHKEDTL RADDIVRALK CEDVSLRQWL DNPERSVDAF ECFHVFRQIV EIVNAAHSQG
101: VVVHNVRPSC FVMSSFNRVS FIESASCSDS GSDEERPKET MKKSQEVGGS RKEEEFQPFP MKEILAMEMS WYTSPEEDTG CANAYASDVY RLGVLLFELF
201: CPVSSREEKS RTMSSLRHRV LPPQILLNWP KEASFCLWLL HPEPSYRPSM SELLKSEFIN EPRESLEERE AAIELRERIE EQELLLEFLF LIQQRKQETA
301: DKKRIRQGAE GVEAEENEDD TLDSTLLESS RLMRNFKKLE SVYFATRYRQ IKASASASND KPLARYYSAL SSDGKSSVSN LTQADSRQGG WIDPFLEGLC
401: KYLTFSKLRV KADLKQGDLL NSANLVCAIG FDRDGELFAT AGVNKKIKIF ECESIINDGR DIHYPVVELA SRSKLSGICW NSYIKSQIAS SNFEGVVQVW
501: DVARGQLVTE MKEHEKRVWS IDISTADPTL LASGSDDGSV KLWSKTLKLN QHGVSIGTIK TKANVCCVQF PSDSGRSLAF GSADHRVYYY DLRNPKLPLC
601: TMIGHTKTVS YVRFVDSSTL VSSSTDNTLK LWDLSMSVSG VNEAPVHSFM GHTNVKNFVG LSVSDGYLAT GSETNEVYVY HKAFPMPVLS YKFKTVDPVS
701: GLEVEDASQF ISSVCWRGQS STLVAANSTG NIKILEMV

Best Arabidopsis Sequence Match ( AT1G53090.2 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.