CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH45169
KRH55271
KRH55275
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	KRH22086	AT1G53090.1	18812498
AT1G53090.1	KRH26155	AT1G53090.1	18812498
AT1G53090.1	KRH27246	AT1G53090.1	18812498
AT1G53090.1	KRH55271	AT1G53090.1	18812498
AT1G53090.1	KRH55275	AT1G53090.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	12887588
AT1G53090.1	KRH73341	AT2G32950.1	12887588
AT1G53090.1	KRH14801	AT2G32950.1	18812498
AT1G53090.1	KRH73341	AT2G32950.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	21798944
AT1G53090.1	KRH73341	AT2G32950.1	21798944
AT1G53090.1	KRG93763	AT5G15850.1	16854975
AT1G53090.1	KRH01455	AT5G15850.1	16854975
AT1G53090.1	KRH18308	AT5G15850.1	16854975
AT1G53090.1	KRH45169	AT5G15850.1	16854975
AT1G53090.1	KRG93763	AT5G15850.1	18812498
AT1G53090.1	KRH01455	AT5G15850.1	18812498
AT1G53090.1	KRH18308	AT5G15850.1	18812498
AT1G53090.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55275	Soybean	cytosol	90.99	89.18
KRH55271	Soybean	cytosol	12.06	74.8
KRH27246	Soybean	plastid	79.31	68.91
KRH22086	Soybean	plastid	78.81	68.54
CDY50512	Canola	nucleus	56.35	60.16
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.84	59.74
Solyc07g063120.2.1	Tomato	cytosol	62.56	59.4
Bra021100.1-P	Field mustard	nucleus	57.99	58.59
CDY20122	Canola	nucleus	58.5	58.5
CDX97654	Canola	nucleus, plastid	58.88	58.36
AT1G53090.1	Thale cress	nucleus	58.76	58.31
CDX98548	Canola	nucleus, plastid	58.76	58.31
Bra027259.1-P	Field mustard	nucleus, plastid	58.5	58.06
CDY21834	Canola	nucleus, plastid	58.25	58.03
VIT_19s0014g02660.t01	Wine grape	nucleus	66.62	57.57
AT3G15354.3	Thale cress	nucleus	60.79	56.69
Bra038098.1-P	Field mustard	nucleus	22.97	55.69
Solyc12g013840.1.1	Tomato	nucleus	60.91	55.68
PGSC0003DMT400039600	Potato	cytosol	60.79	55.18
GSMUA_Achr3P31750_001	Banana	nucleus	52.66	54.04
TraesCS3D01G284500.2	Wheat	cytosol	52.28	53.51
TraesCS3B01G318600.1	Wheat	cytosol	52.16	53.45
OQU87453	Sorghum	cytosol	51.9	53.26
TraesCS3A01G284700.2	Wheat	cytosol	52.03	52.9
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	51.27	52.88
Zm00001d043592_P004	Maize	cytosol	52.92	52.72
Zm00001d011746_P002	Maize	nucleus	52.79	52.07
CDY25880	Canola	nucleus	29.57	50.54
GSMUA_Achr1P13700_001	Banana	nucleus	48.73	49.87
Os01t0725800-01	Rice	nucleus	37.82	47.45
KRH25904	Soybean	mitochondrion	5.08	36.04
KRH60015	Soybean	plasma membrane	35.91	33.73
KRH73341	Soybean	nucleus	26.52	31.24
KRH14801	Soybean	nucleus	26.4	30.81
KRH06512	Soybean	nucleus	36.55	28.15
KRH47949	Soybean	nucleus	36.55	27.83
KRH41290	Soybean	nucleus	36.17	27.56
KRH27856	Soybean	nucleus	37.94	26.63
KRH77627	Soybean	nucleus	37.69	26.31

Protein Annotations

EntrezGene:100813635	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	EMBL:ACUP02007563
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G155700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
UniProt:I1LT55	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH26155
ProteinID:KRH26155	ProteinID:KRH26155.1	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI000233D782	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:24475880..24484563

Molecular Weight (calculated)

88311.4 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.290

Length

788 amino acids

Sequence
(BLAST)

001: MGDISLRLWL DKPERSVNVS ECLHIFREIV EIVHVAHSQG IVVHNVRPSC FVMSSFNHVS FIESATCSDS GSDTLEEAVE IKTPTPTPSY DMHQQRCLGS
101: EDFVPVKTST ASLTDSSCML SSLVFVAPAS LIDDTEENKM KNRRKDEEVA VKKQSFSTKQ VLQMEASWYT SPEEFAGASP SCASDVYRLG VLLFELFCPL
201: ISREEKSRTM SGLRHRVLPP QLLLKWPKEA SFCLWLLHPE PNSRPTIGQL LQSEFLNEPR DDIENCEAAV EVRERIDDQE LLQEFLSLIQ QKKEEAAEKL
301: QHTISFLCSD IEEATKQKTL FNEITGTGLD DCTTSTFPSI TVVDNEESAC LGTRKRVRTI PCVDDTEGID NNMSDDQKND RSILSKTPRF LNNLQKLESA
401: YFLTRCKSAY SSGKLAVQHS PIGTDERSCV NKVALKEKFR EGKSPWTNPF LEGLSKYLSF SKLKVKADLK QGDLLQSSNL VCSLSFDRDA EYFATAGVNK
501: KIKVFECNTT INEDRDIHYP VVEMVSRSTL SSTCWNTYIK SQIASSNFEG VVQLWDVTRS HVQSEMREHE QRVWSIDFSS ADPTLLASGS DDGSVKLWNI
601: NQGISVGTIK TKANVCCVQF PLEFAHSLAF GSADHRIYYY DLRNLKVPLC TLVGHDKTVS YIKFVDTMSL VSASTDNTLK LWDLSLCASR VIDSPIQSFT
701: GHMNVKNFVG LSVSDGYIAT GSETNEVFIY HKAFPMPALS FKFYSSDPLF GNEEDDSTQF ITSVCWRGQS STLLAANSTG NVKILEMT

Best Arabidopsis Sequence Match ( AT1G53090.1 )
(BLAST)

001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.